Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Interpretable, flexible and spatially aware integration of multiple spatial transcriptomics datasets from diverse sources.
PMID 42045691 · PMC13175893 · Nature genetics · 2026 · 6 claims · 7 setups
INSPIRE is a deep-learning method that unifies adversarial learning with a GNN-based encoder and integrated NMF to interpretably integrate multiple spatial transcriptomics datasets
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VIST: variational inference for single cell time series.
PMID 41535949 · PMC12892444 · Genome biology · 2026 · 8 claims · 6 setups
VIST is a VAE-based method that decomposes single-cell gene expression into time-dependent and time-independent latent components
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Has reproduction · 67
Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material.
PMID 41029822 · PMC12486589 · Journal of translational medicine · 2025 · 8 claims · 6 setups
The negative binomial distribution best fits fRNA-seq transcript counts, with little evidence supporting zero-inflated extensions
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NGSTroubleFinder: a tool for detection and quantification of contamination and kinship across human NGS data.
PMID 41608734 · PMC12838523 · NAR genomics and bioinformatics · 2026 · 8 claims · 8 setups
NGSTroubleFinder detects cross-sample contamination, sample swaps, kinship, and sex mismatches from BAM/CRAM files without requiring additional variant-calling steps