Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: drug ✕ Assay: bayesian ✕ Clear

Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes.

PMID 18989394 · PMC2566816 · PLoS computational biology · 2008 · 7 claims · 4 setups

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A novel Bayesian method, RASER, can detect site-specific evolutionary rate shifts and the lineages in which they occurred without pre-specifying candidate lineages.

hiv-1 simulated bayesian simulation structural
Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation.

PMID 41039608 · PMC12490039 · Genome medicine · 2025 · 7 claims · 7 setups

Has reproduction · 100

A distinct gene co-expression module with a prominent T cell signature is associated with unstable plaques.

carotid calcified atherosclerotic cell-specific microarray single-cell immunohistochemistry
Integromics: challenges in data integration.

PMID 12186644 · PMC139396 · Genome biology · 2002 · 8 claims · 7 setups

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There is no simple solution to database integration in genomics/bioinformatics

lines molecular gene monsanto high-throughput cluster-correlation microarray
Activation instead of blocking mesolimbic dopaminergic reward circuitry is a preferred modality in the long term treatment of reward deficiency syndrome (RDS): a commentary.

PMID 19014506 · PMC2615745 · Theoretical biology & medical modelling · 2008 · 8 claims · 6 setups

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A biphasic treatment approach—acute DA receptor blocking followed by long-term DA release/activation at the NAc—is needed to treat RDS without inducing abnormal mood or craving.

kidney alcohol-preferring obese rodents receptor dna-directed meta-analysis

Experiments

Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes.

Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation.

Integromics: challenges in data integration.

Activation instead of blocking mesolimbic dopaminergic reward circuitry is a preferred modality in the long term treatment of reward deficiency syndrome (RDS): a commentary.