Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Genomics--from Neanderthals to high-throughput sequencing.
PMID 16934106 · PMC1779599 · Genome biology · 2006 · 8 claims · 8 setups
Next-generation sequencing platforms (GS20/454 and Solexa) can deliver the throughput and cost reductions needed for population-scale and medical resequencing.
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Has reproduction · 97
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing.
PMID 30744683 · PMC6371477 · Genome biology · 2019 · 8 claims · 8 setups
CellFishing.jl searches prebuilt databases for cells with similar expression patterns with high accuracy and throughput using locality-sensitive hashing.
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Has reproduction · 53
Combining evidence of preferential gene-tissue relationships from multiple sources.
PMID 23950964 · PMC3741196 · PloS one · 2013 · 8 claims · 8 setups
A high-level integration approach combining three methods across four human microarray datasets, merged by consensus voting and a rule-based inner/total score, predicts preferentially expressed genes while reducing method- and study-specific bias.
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How many human genes can be defined as housekeeping with current expression data?
PMID 18416810 · PMC2396180 · BMC genomics · 2008 · 8 claims · 4 setups
Current EST and microarray transcriptome sampling is far from saturated, limiting gene detectability and understanding of tissue-specific expression