Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 5

System / cell line: pairwise ✕ Assay: bias ✕ Clear

Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences.

PMID 16759380 · PMC1525190 · BMC genomics · 2006 · 8 claims · 6 setups

Full-text index only

Overall pairwise genomic divergences among cattle, dog and human are relatively constant (0.32–0.37 change/site)

orthologous random cattle aligned three-way pairwise bac
Reverse polarization in amino acid and nucleotide substitution patterns between human-mouse orthologs of two compositional extrema.

PMID 17895298 · PMC2533592 · DNA research : an international journal for rapid publication of reports on genes and genomes · 2007 · 8 claims · 7 setups

Full-text index only

Nucleotide and amino acid substitution trends between human-mouse orthologs are highly asymmetric and polarized in opposite directions for high-GC versus low-GC gene groups.

human-mouse high aarm orthologous content pairwise
Evolutionary distance estimation and fidelity of pair wise sequence alignment.

PMID 15840174 · PMC1087827 · BMC bioinformatics · 2005 · 8 claims · 8 setups

Full-text index only

Evolutionary distance estimation is relatively unaffected by alignment error as long as 50% or more of homologous sites remain identical between sequences

simulated simulated sequence indel
Bayesian estimates of linkage disequilibrium.

PMID 17592642 · PMC1924864 · BMC genetics · 2007 · 8 claims · 3 setups

Full-text index only

The MLE of D' is biased toward disequilibrium, with the bias particularly severe in small samples (<100 subjects) and rare alleles (MAF<0.05)

simulated genotype pairwise computer genotype bayesian
Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity.

PMID 17919333 · PMC2174954 · BMC genomics · 2007 · 8 claims · 4 setups

Full-text index only

GBS/MFS strains are genomically heterogeneous, falling into about six major lineages rather than a single clonal group

jejuni subset matched comparative fisher's hierarchical

Experiments

Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences.

Reverse polarization in amino acid and nucleotide substitution patterns between human-mouse orthologs of two compositional extrema.

Evolutionary distance estimation and fidelity of pair wise sequence alignment.

Bayesian estimates of linkage disequilibrium.

Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity.