Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Full-text index only
The whole alignment and nothing but the alignment: the problem of spurious alignment flanks.
PMID 18796526 · PMC2566872 · Nucleic acids research · 2008 · 8 claims · 4 setups
Some common scoring schemes tend to overextend alignments, generating spurious alignment flanks up to hundreds of bp/amino acids in length
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Has reproduction · 59
eDNAmap: A Metabarcoding Web Tool for Comparing Marine Biodiversity, With Special Reference to Teleost Fish.
PMID 41189540 · PMC12627913 · Molecular ecology resources · 2026 · 6 claims · 5 setups
eDNAmap is a web-based platform that stores marine eDNA metabarcoding data and lets users plot sampling locations, generate heatmaps, and run nMDS/cluster analyses on uploaded or database species/ASV composition data.
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Full-text index only
A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes.
PMID 19680427 · PMC2714467 · PLoS computational biology · 2009 · 8 claims · 6 setups
The naïve mapping approach (present if ≥1 associated function is found) leads to an inflated estimate of biological pathways and overestimates functional diversity of a sample.
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Has reproduction · 69
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.
PMID 23496952 · PMC3655071 · BMC genomics · 2013 · 8 claims · 8 setups
Representative de novo transcriptome assemblies are generated with as few as ~20 million reads for single-tissue samples and ~30 million reads for whole animals at the mRNA-coverage level.