Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: healthy ✕ Assay: cnv ✕ Clear

DNA methylation biomarkers-based pan-cancer classifier: predictive modeling for cancer classification.

PMID 42152108 · PMC13185202 · Genome medicine · 2026 · 8 claims · 5 setups

Full-text index only

Relatively simple ML models (logistic regression) outperform complex algorithms such as deep neural networks for methylation-based cancer classification

validation cns healthy genes methylation copy-number gene-set
Unveiling the NEFH+ malignant cell subtype: Insights from single-cell RNA sequencing in prostate cancer progression and tumor microenvironment interactions.

PMID 39759507 · PMC11695424 · Frontiers in immunology · 2024 · 8 claims · 8 setups

Full-text index only

A malignant cell subtype in PCa with high expression of NEFH was identified, located at the differentiation terminal, showing higher malignancy and association with advanced tumor lesions.

pca malignant tcga mda single-cell infercnv pseudotime
Integrative CSF profiling identifies disease-specific immune responses in leptomeningeal disease.

PMID 41794040 · PMC13006398 · Cell reports. Medicine · 2026 · 8 claims · 8 setups

Full-text index only

CSF exhibits distinct, disease-specific immune landscapes across CNSL, BrMs, and GB-associated LMD

csf peripheral brain cell-free single-cell deep spatial
Development and validation of an oxidative phosphorylation based prognostic model revealing tumor progression and immune microenvironment in lung adenocarcinoma.

PMID 41670771 · PMC12996521 · Discover oncology · 2026 · 8 claims · 8 setups

Full-text index only

OXPHOS activity is significantly elevated in LUAD tumor tissue compared to adjacent normal tissue

tcga-luad geo lung single-cell bulk ssgsea cibersort

Experiments

DNA methylation biomarkers-based pan-cancer classifier: predictive modeling for cancer classification.

Unveiling the NEFH+ malignant cell subtype: Insights from single-cell RNA sequencing in prostate cancer progression and tumor microenvironment interactions.

Integrative CSF profiling identifies disease-specific immune responses in leptomeningeal disease.

Development and validation of an oxidative phosphorylation based prognostic model revealing tumor progression and immune microenvironment in lung adenocarcinoma.