Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Structured Promoter Variability in Epigenetically Regulated Operons Contributes to Surface Adaptation in Salmonella.
PMID 41684216 · PMC12902445 · Microbial biotechnology · 2026 · 7 claims · 5 setups
Structured, recurrent promoter variation in epigenetically regulated operons is a novel layer of functional adaptation in Salmonella, complementing genetic and epigenetic mechanisms.
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Has reproduction · 68
Complete Genome Sequencing of Lactobacillus plantarum ZLP001, a Potential Probiotic That Enhances Intestinal Epithelial Barrier Function and Defense Against Pathogens in Pigs.
PMID 30542296 · PMC6277807 · Frontiers in physiology · 2018 · 8 claims · 8 setups
The complete genome of L. plantarum ZLP001 was sequenced and compared with 18 other L. plantarum genomes to identify genomic features underlying its gut-health-promoting probiotic properties.
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Transposable elements are driving rapid adaptation of Enterococcus faecium.
PMID 42020750 · PMC13216065 · Nature · 2026 · 8 claims · 8 setups
E. faecium has the highest IS density among ESKAPEE pathogens, dominated by replicative ISL3 family elements
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Diversity and evolution of a phase-variable multi-locus antigen in Neisseria gonorrhoeae.
PMID 42113870 · PMC13183285 · PLoS pathogens · 2026 · 8 claims · 8 setups
Each N. gonorrhoeae genome has on average 7 distinct opa alleles at 9-12 opa loci
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Conserved gene clusters in entomopathogenic filamentous fungi.
PMID 42047519 · PMC13123250 · Genetics and molecular biology · 2026 · 8 claims · 6 setups
Most gene cluster families (GCFs) identified across Hypocreales are genus-specific or orphaned (singletons) rather than broadly conserved
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Has reproduction · 99
getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories.
PMID 35804320 · PMC9264741 · BMC bioinformatics · 2022 · 8 claims · 8 setups
getSequenceInfo (gSeqI) allows programmatic (CLI) or GUI-based retrieval of sequence data and metadata from GenBank, RefSeq, and ENA across Linux, MacOS, and Windows.
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A transcriptome sequence dataset characterizing eggs, nymphs and adults of Oxycarenus hyalinipennis, the cotton seed bug.
PMID 41717652 · PMC12915258 · Data in brief · 2026 · 8 claims · 8 setups
This dataset provides the first transcriptomic resources for the invasive pest Oxycarenus hyalinipennis
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Single point mutations in global regulatory genes restore cephalosporin resistance in a low-MIC Enterococcus faecium natural isolate.
PMID 41870094 · PMC13148053 · Antimicrobial agents and chemotherapy · 2026 · 8 claims · 8 setups
E. faecium isolates with low MICs to cephalosporins can arise in clinical settings without laboratory manipulation
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Has reproduction · 92
Genome Sequencing of Methicillin-Resistant and Methicillin-Susceptible Mammaliicoccus sciuri from Diseased Animals.
PMID 36125295 · PMC9583799 · Microbiology resource announcements · 2022 · 7 claims · 7 setups
Draft genomes of a methicillin-resistant Mammaliicoccus sciuri strain (2254A, from an armadillo) and a methicillin-susceptible strain (6942A, from a cow) are reported.
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Has reproduction · 59
De novo assembly of a transcriptome for Calanus finmarchicus (Crustacea, Copepoda)--the dominant zooplankter of the North Atlantic Ocean.
PMID 24586345 · PMC3929608 · PloS one · 2014 · 8 claims · 8 setups
A de novo transcriptome for Calanus finmarchicus was assembled from six developmental-stage libraries, yielding 206,041 contigs and a reference set of 96,090 unique comps, representing a new molecular resource for this species.