Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Full-text index only
CLUES A Comprehensive Workflow for Integrating Geospatial Data in Biomedical Research.
PMID 42128886 · PMC13172076 · Nature communications · 2026 · 8 claims · 5 setups
CLUES is an open-source, end-to-end workflow that automates selection, download, harmonization, and linkage of open-access geospatial environmental data to individual-level biomedical data without requiring geospatial expertise.
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Has reproduction · 84
Fractional ridge regression: a fast, interpretable reparameterization of ridge regression.
PMID 33252656 · PMC7702219 · GigaScience · 2020 · 8 claims · 2 setups
Ridge regression can be reparameterized in terms of γ, the ratio between the L2-norms of the regularized and unregularized (OLS) coefficient solutions, defining 'fractional ridge regression' (FRR)
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Has reproduction · 49
oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets.
PMID 22973536 · PMC3429929 · G3 (Bethesda, Md.) · 2012 · 8 claims · 6 setups
oPOSSUM-3 is a web-accessible system that identifies over-represented TFBS and TFBS families in DNA sequences of co-expressed genes or in sequences from high-throughput methods such as ChIP-Seq.
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Full-text index only
DupyliCate: mining, classifying, and characterizing gene duplications.
PMID 42209743 · PMC13219399 · Scientific reports · 2026 · 8 claims · 8 setups
DupyliCate is a Python tool for identifying and classifying gene duplication arrays, using BUSCO-based species-specific thresholds and offering integrated expression divergence and Ka/Ks analysis.