Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Single-cell transcriptional dynamics of flavivirus infection.

  PMID 29451494 · PMC5826272 · eLife · 2018 · 8 claims · 6 setups

  Has reproduction · 90

  viscRNA-Seq simultaneously quantifies whole single-cell host transcriptome and intracellular viral RNA from the same cell, including non-polyadenylated viruses via a virus-specific oligo

  hepatoma single huh7 denv-infected single-cell qpcr loss-of-function

• System-based proteomic analysis of the interferon response in human liver cells.

  PMID 15287976 · PMC507879 · Genome biology · 2004 · 7 claims · 4 setups

  Full-text index only

  ICAT-based quantitative proteomics identified 1,364 proteins in Huh7 cells at <5% false-positive rate, with 54 induced and 24 repressed >2-fold by IFN treatment

  huh7 computational icat gene interaction

• SECIS elements in the coding regions of selenoprotein transcripts are functional in higher eukaryotes.

  PMID 17169995 · PMC1802603 · Nucleic acids research · 2007 · 8 claims · 5 setups

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  SECIS elements located within coding regions of selenoprotein mRNAs support functional Sec insertion in mammalian cells

  viral hek293 hepatoma tblastn computational western

• Systematic prediction of human membrane receptor interactions.

  PMID 19798668 · PMC3076061 · Proteomics · 2009 · 7 claims · 6 setups

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  Predicting interactions specifically for membrane receptors, rather than deriving them from a general human interactome model, improves prediction performance for these proteins

  cos-1 um-22a hep3b gst-egfr co-immunoprecipitation pulldown binding