Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 31

System / cell line: assembled ✕ Assay: conformation ✕ Clear

Chromosome-level genome assembly of agar-producing red seaweed Gracilaria vermiculophylla.

PMID 41629338 · PMC12966425 · Scientific data · 2026 · 8 claims · 8 setups

Has reproduction · 91

Assembled the first chromosome-level genome of G. vermiculophylla: 77.5 Mb, 22 pseudochromosomes, contig N50 2.61 Mb, scaffold N50 3.16 Mb

vermiculophylla assembled predicted genome short-read nanopore hi-c
The Nuclear and Mitochondrial Genomes of the Lined Rockskipper, Istiblennius lineatus (Teleostei: Blenniidae).

PMID 42117780 · PMC13195801 · Genome biology and evolution · 2026 · 7 claims · 8 setups

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A chromosome-scale nuclear genome assembly of I. lineatus (643.23 Mb, 24 pseudochromosomes) was generated using PacBio HiFi reads and Arima Hi-C scaffolding.

istiblennius lineatus pacbio hi-c rna-seq
The genome sequence of the tub gurnard, Chelidonichthys lucerna (Linnaeus, 1758) (Perciformes: Triglidae).

PMID 41625984 · PMC12856256 · Wellcome open research · 2026 · 8 claims · 8 setups

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A genome assembly was generated for Chelidonichthys lucerna (tub gurnard) with two haplotypes of 649.07 Mb (hap1) and 651.58 Mb (hap2)

chelidonichthys pacbio hi-c sequencing
The genome sequence of the soldier beetle, Malthodes minimus (Linnaeus, 1758) (Coleoptera: Cantharidae).

PMID 41769330 · PMC12949377 · Wellcome open research · 2026 · 8 claims · 8 setups

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The Malthodes minimus genome assembly has a total length of 583.60 Mb, with 97.75% scaffolded into 7 chromosomal pseudomolecules including X and Y sex chromosomes

malthodes pacbio assembled alternate pacbio hi-c barcoding
The genome sequence of the Osiris Blue, Cupido osiris (Meigen, 1830) (Lepidoptera: Lycaenidae).

PMID 41798706 · PMC12963831 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was produced for Cupido osiris (Osiris Blue butterfly)

cupido pacbio hi-c k-mer
The genome sequence of the Bicolour Sedge, Triaenodes bicolor (Curtis, 1834) (Trichoptera: Leptoceridae).

PMID 41852352 · PMC12993304 · Wellcome open research · 2026 · 7 claims · 8 setups

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A genome assembly was generated for a male Triaenodes bicolor specimen, comprising two haplotypes of 615.75 Mb and 613.86 Mb.

triaenodes pacbio hi-c barcoding
The genome sequence of the Eastern Rock Grayling, Hipparchia syriaca (Staudinger, 1871) (Lepidoptera: Nymphalidae).

PMID 41913757 · PMC13033134 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was generated for Hipparchia syriaca (Eastern Rock Grayling) from a female specimen collected in Măcin, Romania

organism pacbio assembled pacbio hi-c k-mer
The chromosomal genome sequence of the buttercup lucine, Anodontia alba Link, 1807 (Lucinida: Lucinidae) and its associated microbial metagenome sequences.

PMID 41913758 · PMC13033139 · Wellcome open research · 2026 · 6 claims · 7 setups

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Genome assembly of Anodontia alba (buttercup lucine) with total length 1,862.85 Mb, 99.28% scaffolded into 18 chromosomal pseudomolecules

anodontia microbial pacbio hi-c sequencing
The genome sequence of the European Pepper moth, Duponchelia fovealis (Zeller, 1847) (Lepidoptera: Crambidae).

PMID 41929846 · PMC13040225 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level, haplotype-resolved genome assembly was generated for Duponchelia fovealis

organism pacbio assembled pacbio hi-c k-mer
The genome sequence of a parasitoid wasp, Netelia inedita (Kokujev, 1899) (Hymenoptera: Ichneumonidae).

PMID 41938268 · PMC13049423 · Wellcome open research · 2026 · 7 claims · 8 setups

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A genome assembly was generated for a female Netelia inedita specimen as part of the Darwin Tree of Life project

netelia assembled pacbio hi-c sequencing
The chromosomal genome sequence of the sponge, Rhopaloeides odorabile Thompson, Murphy, Bergquist & Evans, 1987 (Dictyoceratida: Spongiidae) and its associated microbial metagenome sequences.

PMID 42232316 · PMC13224822 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was produced for the sponge Rhopaloeides odorabile using the Tree of Life pipeline

rhopaloeides odorabile-associated odorabile recovered pacbio hi-c sequencing
A chromosome-level genome assembly of Plantago ovata.

PMID 36707685 · PMC9883528 · Scientific reports · 2023 · 8 claims · 8 setups

Has reproduction · 99

A chromosome-level reference genome assembly of P. ovata was constructed using PacBio long reads and Hi-C scaffolding.

plantago ovata pacbio hi-c k-mer
The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet & Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences.

PMID 41835092 · PMC12988363 · Wellcome open research · 2026 · 7 claims · 7 setups

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A chromosome-level genome assembly of Lycopodina hypogea was generated, with total length 235.10 Mb and 98.85% of sequence scaffolded into 15 chromosomal pseudomolecules.

lycopodina microbial hypogea pacbio hi-c rna-seq
The chromosomal genome sequence of the sponge Phakellia ventilabrum (Linnaeus, 1767) and its associated microbial metagenome sequences.

PMID 41625985 · PMC12859430 · Wellcome open research · 2026 · 8 claims · 8 setups

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The Phakellia ventilabrum genome assembly spans 211.92 Mb with 99.97-99.98% scaffolded into 25 chromosomal pseudomolecules

phakellia pacbio genome microbial pacbio hi-c sequencing
The genome sequence of the Purple Cloud, Actinotia polyodon (Clerck, 1759) (Lepidoptera: Noctuidae).

PMID 41696496 · PMC12902673 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosomal-level genome assembly was generated for Actinotia polyodon (Purple Cloud moth) from a single female specimen

actinotia pacbio hi-c k-mer
The genome sequence of the Madeiran Speckled Wood, Pararge xiphia Hübner, 1819 (Lepidoptera: Nymphalidae).

PMID 41908930 · PMC13022564 · Wellcome open research · 2026 · 6 claims · 8 setups

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A chromosome-level genome assembly was generated for a male Pararge xiphia specimen, containing two haplotypes of 528.41 Mb and 523.51 Mb

organism pacbio assembled pacbio hi-c k-mer
The chromosomal genome sequence of the tubeworm, Lamellibrachia columna Southward, 1991 (Sabellida: Siboglinidae).

PMID 41993727 · PMC13080331 · Wellcome open research · 2026 · 8 claims · 8 setups

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The Lamellibrachia columna genome assembly spans 879.73 Mb, with 99.96% scaffolded into 15 chromosomal pseudomolecules

lamellibrachia columna filtered assembled pacbio hi-c sequencing
The genome sequence of the Acorn Weevil, Curculio glandium (T.Marsham, 1802) (Coleoptera: Curculionidae).

PMID 42021765 · PMC13096787 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosomally complete genome assembly was produced for Curculio glandium (Acorn Weevil) as part of the Darwin Tree of Life project

curculio assembled alternate pacbio hi-c sequencing
The genome sequence of the Portuguese Dappled White, Euchloe tagis (Hübner, 1804) (Lepidoptera: Pieridae).

PMID 42028159 · PMC13100615 · Wellcome open research · 2026 · 7 claims · 8 setups

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A chromosome-level genome assembly was generated for Euchloe tagis (Portuguese Dappled White) as part of Project Psyche

euchloe pacbio hi-c k-mer
The chromosomal genome sequence of the moon jellyfish, Aurelia sp. 4 Dawson et al. 2005 (Semaeostomeae: Ulmaridae) and its associated microbial metagenome sequences.

PMID 42116832 · PMC13157608 · Wellcome open research · 2026 · 7 claims · 8 setups

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Aurelia sp. 4 chromosomal genome assembly has a total length of 462.10 Mb with 99.99% of sequence scaffolded into 21 chromosomal pseudomolecules

aurelia microbial pacbio hi-c rna-seq

Experiments

Chromosome-level genome assembly of agar-producing red seaweed Gracilaria vermiculophylla.

The Nuclear and Mitochondrial Genomes of the Lined Rockskipper, Istiblennius lineatus (Teleostei: Blenniidae).

The genome sequence of the tub gurnard, Chelidonichthys lucerna (Linnaeus, 1758) (Perciformes: Triglidae).

The genome sequence of the soldier beetle, Malthodes minimus (Linnaeus, 1758) (Coleoptera: Cantharidae).

The genome sequence of the Osiris Blue, Cupido osiris (Meigen, 1830) (Lepidoptera: Lycaenidae).

The genome sequence of the Bicolour Sedge, Triaenodes bicolor (Curtis, 1834) (Trichoptera: Leptoceridae).

The genome sequence of the Eastern Rock Grayling, Hipparchia syriaca (Staudinger, 1871) (Lepidoptera: Nymphalidae).

The chromosomal genome sequence of the buttercup lucine, Anodontia alba Link, 1807 (Lucinida: Lucinidae) and its associated microbial metagenome sequences.

The genome sequence of the European Pepper moth, Duponchelia fovealis (Zeller, 1847) (Lepidoptera: Crambidae).

The genome sequence of a parasitoid wasp, Netelia inedita (Kokujev, 1899) (Hymenoptera: Ichneumonidae).

The chromosomal genome sequence of the sponge, Rhopaloeides odorabile Thompson, Murphy, Bergquist & Evans, 1987 (Dictyoceratida: Spongiidae) and its associated microbial metagenome sequences.

A chromosome-level genome assembly of Plantago ovata.

The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet & Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences.

The chromosomal genome sequence of the sponge Phakellia ventilabrum (Linnaeus, 1767) and its associated microbial metagenome sequences.

The genome sequence of the Purple Cloud, Actinotia polyodon (Clerck, 1759) (Lepidoptera: Noctuidae).

The genome sequence of the Madeiran Speckled Wood, Pararge xiphia Hübner, 1819 (Lepidoptera: Nymphalidae).

The chromosomal genome sequence of the tubeworm, Lamellibrachia columna Southward, 1991 (Sabellida: Siboglinidae).

The genome sequence of the Acorn Weevil, Curculio glandium (T.Marsham, 1802) (Coleoptera: Curculionidae).

The genome sequence of the Portuguese Dappled White, Euchloe tagis (Hübner, 1804) (Lepidoptera: Pieridae).

The chromosomal genome sequence of the moon jellyfish, Aurelia sp. 4 Dawson et al. 2005 (Semaeostomeae: Ulmaridae) and its associated microbial metagenome sequences.