Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 374

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Parasitic connections: a patescibacterial epibiont, its methylotrophic gammaproteobacterial host, and their phages.

PMID 41805398 · PMC13059738 · mBio · 2026 · 8 claims · 7 setups

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Strigamonas methylophilicida sp. nov. is a new patescibacterial genus and species within the family Absconditicoccaceae

freshwater fixed rsa individual phase transmission fluorescence-activated
Standing on the shoulders of microbes: microbiome thermal priming buffers the effects of heatwaves on clams by preventing stress overreaction.

PMID 41987828 · PMC13077298 · ISME communications · 2026 · 8 claims · 5 setups

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Transplantation of a microbiome from heat-primed donor clams into non-acclimated recipients is sufficient to enhance host resilience during a subsequent simulated heatwave.

ruditapes philippinarum 16s host enzymatic
Aeromonas piscicola in Chilean Salmon Farming: Genomic Insights, Phenotypic Traits, Virulence and Field Immune Response.

PMID 42075730 · PMC13118686 · Pathogens (Basel, Switzerland) · 2026 · 8 claims · 8 setups

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Aeromonas piscicola is a causative agent of furunculosis-like outbreaks in Atlantic salmon in Chile, reported here for the first time.

salmonicida-like piscicola bacterial salmo congo bacterial mic
Improved chromosome-level genome assembly of the American cockroach, Periplaneta americana.

PMID 41123565 · PMC12774602 · G3 (Bethesda, Md.) · 2026 · 8 claims · 7 setups

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Produced the first chromosome-level genome assembly of P. americana, scaffolded into 17 chromosome-scale scaffolds consistent with karyotype

leg midgut assembled blattodea pacbio hi-c bulk
The fungal pathogen Rhizoctonia solani AG-8 has 2 nuclear haplotypes that differ in abundance.

PMID 41124349 · PMC12774589 · G3 (Bethesda, Md.) · 2026 · 8 claims · 8 setups

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R. solani isolates AG8-1 and AG8-3 each possess 2 distinct nuclear haplotypes, each ~50 Mbp assembled into 16 chromosomes

solani ag8-1 rhizoctonia annotated pacbio hi-c stranded
Estrogen Production in Pancreatic Cancer Shapes a Tumor-Suppressive Stromal Microenvironment.

PMID 41258799 · PMC12862343 · Cancer research · 2026 · 8 claims · 6 setups

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Serum levels of stromal biomarkers associated with favorable outcomes were significantly higher in female patients with PDAC than in male patients

pdac pdx magnetic bioinformatic single-nucleus
Multimodal epigenetic and enhancer network remodeling shape the transcriptional landscape of human beige adipocytes.

PMID 41501500 · PMC12881478 · Communications biology · 2026 · 8 claims · 8 setups

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The white adipocyte transcriptional program is tightly linked to promoter-level modulation of H3K27ac and chromatin accessibility.

adipose asc-derived white ascs bulk atac-seq chip-seq
Alternative polyadenylation mediated the downregulation of lysophosphatidylglycerol acyltransferase 1 in metabolic dysfunction-associated steatotic liver disease.

PMID 41507908 · PMC12879358 · Lipids in health and disease · 2026 · 8 claims · 8 setups

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Early hepatocyte-specific APA remodeling, characterized by 3' UTR lengthening of metabolism-related genes (especially LPGAT1), occurs in MASLD and is established before fibrosis progression

liver hepg2 293t serum bulk single-cell oil
Cohesion is established during DNA replication utilising chromosome associated cohesin rings as well as those loaded de novo onto nascent DNAs.

PMID 32515737 · PMC7282809 · eLife · 2020 · 8 claims · 3 setups

Has reproduction · 90

Both cohesin conversion and Scc2-dependent de novo loading mechanisms generate cohesion in S. cerevisiae, each requiring a distinct set of replisome-associated proteins.

cerevisiae cohesin calibrated flow
Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates.

PMID 18541024 · PMC2446394 · BMC evolutionary biology · 2008 · 8 claims · 3 setups

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Extant bony vertebrates (osteichthyans) retain only Lbx1- and Lbx2-type genes; no distinct Lbx3/Lbx4 proteins exist.

osteichthyan aligned genome blast maximum comparative
Human genetics branches out in Barcelona.

PMID 18710599 · PMC2575509 · Genome biology · 2008 · 8 claims · 8 setups

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A meta-analysis of three GWAS scans (DIAGRAM) identifies new type 2 diabetes susceptibility loci (JAZF1, CDC123/CAMK1D, ADAMTS9, THADA) with modest individual effect

patients families lymphoblastoid genome genome-wide gwas genetic
NEIBank: genomics and bioinformatics resources for vision research.

PMID 18648525 · PMC2480482 · Molecular vision · 2008 · 8 claims · 7 setups

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NEIBank is an integrated genomics and bioinformatics resource for vision research, combining EST/cDNA clone data, SAGE expression data, and eye disease gene databases.

dissected eye retina cdna est serial sequence
The genome sequence of the Roundleaf geranium, Geranium rotundifolium L. (Geraniales: Geraniaceae).

PMID 42021764 · PMC13096780 · Wellcome open research · 2026 · 8 claims · 8 setups

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The genome assembly of Geranium rotundifolium has a total length of 497.00 megabases, with 97.57% scaffolded into 13 chromosomal pseudomolecules.

leaf silica-dried pacbio alternate flow barcoding pacbio
The chromosomal genome sequence of the sponge, Rhopaloeides odorabile Thompson, Murphy, Bergquist & Evans, 1987 (Dictyoceratida: Spongiidae) and its associated microbial metagenome sequences.

PMID 42232316 · PMC13224822 · Wellcome open research · 2026 · 8 claims · 8 setups

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A chromosome-level genome assembly was produced for the sponge Rhopaloeides odorabile using the Tree of Life pipeline

rhopaloeides odorabile-associated odorabile recovered pacbio hi-c sequencing

Experiments

Parasitic connections: a patescibacterial epibiont, its methylotrophic gammaproteobacterial host, and their phages.

Standing on the shoulders of microbes: microbiome thermal priming buffers the effects of heatwaves on clams by preventing stress overreaction.

Aeromonas piscicola in Chilean Salmon Farming: Genomic Insights, Phenotypic Traits, Virulence and Field Immune Response.

Improved chromosome-level genome assembly of the American cockroach, Periplaneta americana.

The fungal pathogen Rhizoctonia solani AG-8 has 2 nuclear haplotypes that differ in abundance.

Estrogen Production in Pancreatic Cancer Shapes a Tumor-Suppressive Stromal Microenvironment.

Multimodal epigenetic and enhancer network remodeling shape the transcriptional landscape of human beige adipocytes.

Alternative polyadenylation mediated the downregulation of lysophosphatidylglycerol acyltransferase 1 in metabolic dysfunction-associated steatotic liver disease.

Cohesion is established during DNA replication utilising chromosome associated cohesin rings as well as those loaded de novo onto nascent DNAs.

Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates.

Human genetics branches out in Barcelona.

NEIBank: genomics and bioinformatics resources for vision research.

The genome sequence of the Roundleaf geranium, Geranium rotundifolium L. (Geraniales: Geraniaceae).

The chromosomal genome sequence of the sponge, Rhopaloeides odorabile Thompson, Murphy, Bergquist & Evans, 1987 (Dictyoceratida: Spongiidae) and its associated microbial metagenome sequences.