Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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CRAGE-RB-PI-seq reveals transcriptional dynamics of plant-associated bacteria during root colonization.
PMID 41723172 · PMC13036076 · Nature communications · 2026 · 8 claims · 7 setups
CRAGE-RB-PI-seq, combining CRAGE genome engineering with randomly-barcoded promoter-library insertion sequencing, enables targeted amplification of barcoded bacterial transcripts that bypasses plant RNA interference.
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Rapid identification of microbial pathogens and antimicrobial resistance from bloodstream infections using long-read sequencing.
PMID 42274466 · PMC13256323 · Microbial genomics · 2026 · 8 claims · 8 setups
A novel ONT long-read sequencing laboratory and bioinformatic workflow rapidly identifies bacterial and fungal organisms and AMR determinants from positive blood cultures
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Conservation, variability and the modeling of active protein kinases.
PMID 17912359 · PMC1989141 · PloS one · 2007 · 7 claims · 5 setups
A novel sequence-order independent (fold-independent) structural alignment algorithm was developed that maximizes side-chain similarity to produce a consensus kinase structure.
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An SVM-based system for predicting protein subnuclear localizations.
PMID 16336650 · PMC1325059 · BMC bioinformatics · 2005 · 7 claims · 3 setups
New kernels defined on k-peptide vectors mapped by BLOSUM62-based high-scored pair matrices (D1, D2, D3) improve SVM discrimination of protein subnuclear localization compared to conventional k-peptide encodings.