Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• How negative sampling shapes the performance of transcription factor binding site prediction models.

  PMID 41601205 · PMC12910371 · Bioinformatics (Oxford, England) · 2026 · 7 claims · 5 setups

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  Negative sampling technique significantly impacts TFBS prediction model performance and interpretation of results

  encode same genome chip-seq atac-seq deep

• Genetic drift acts strongly on influenza virus populations within acute human infections but is obscured by other factors within acutely infected swine.

  PMID 42027246 · PMC13100903 · Virus evolution · 2026 · 8 claims · 4 setups

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  Within-host human IAV populations have a very small effective population size (N_E = 49, 95% CI [28, 84])

  within-host swine simulated population diffusion simulation

• Temporal trends in methane emissions from a small eutrophic reservoir: the key role of a spring burst.

  PMID 35126532 · PMC8815417 · Biogeosciences (Online) · 2021 · 8 claims · 7 setups

  Has reproduction · 72

  Acton Lake had cumulative areal CH4 emission rates of 45.6 ± 8.3 g CH4 m-2 in 2017 and 51.4 ± 4.3 g CH4 m-2 in 2018 (109 ± 14 and 123 ± 10 Mg CH4 whole-reservoir, respectively)

  whole-reservoir sediment-water water reservoir eddy active floating