Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 100
FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow.
PMID 34681040 · PMC8535801 · Genes · 2021 · 8 claims · 4 setups
FA-nf, implemented in Nextflow with Docker/Singularity containerization, integrates NCBI BLAST+, DIAMOND, InterProScan, and KEGG (KAAS/KofamKOALA) into a single functional annotation pipeline.
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Full-text index only
nf-core/proteinfamilies: a scalable pipeline for the generation of protein families.
PMID 41563008 · PMC12950615 · GigaScience · 2026 · 8 claims · 3 setups
nf-core/proteinfamilies is a scalable, parametrizable, open-source Nextflow pipeline that generates new protein families or assigns sequences to existing families using profile HMMs and MSAs
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Has reproduction · 50
MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences.
PMID 35330728 · PMC8940201 · Frontiers in genetics · 2022 · 7 claims · 6 setups
MEDUSA correctly identifies more species than MEGAN 6 CE, especially less abundant species.
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Full-text index only
The genome sequence of the soldier beetle, Malthodes minimus (Linnaeus, 1758) (Coleoptera: Cantharidae).
PMID 41769330 · PMC12949377 · Wellcome open research · 2026 · 8 claims · 8 setups
The Malthodes minimus genome assembly has a total length of 583.60 Mb, with 97.75% scaffolded into 7 chromosomal pseudomolecules including X and Y sex chromosomes