Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 10

System / cell line: genomic ✕ Assay: discordant ✕ Clear

Complex landscapes of somatic rearrangement in human breast cancer genomes.

PMID 20033038 · PMC3398135 · Nature · 2009 · 8 claims · 6 setups

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There are more somatic rearrangements in some breast cancers than previously appreciated by cytogenetic methods.

breast subset confirmed paired-end fish exon-exon
Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate.

PMID 19803774 · PMC2893889 · Twin research and human genetics : the official journal of the International Society for Twin Studies · 2009 · 7 claims · 5 setups

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Postzygotic genomic alterations are not a common cause of monozygotic twin discordance for isolated cleft lip and/or palate.

peripheral array custom snp
Completing the map of human genetic variation.

PMID 17495918 · PMC2685471 · Nature · 2007 · 8 claims · 5 setups

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A community resource initiative will sequence fosmid and BAC clone libraries from 62 HapMap individuals to systematically discover and resolve structural genetic variants at nucleotide resolution

genomic fosmid full hapmap paired targeted genotyping
Association of GSK3B with Alzheimer disease and frontotemporal dementia.

PMID 18852354 · PMC2841136 · Archives of neurology · 2008 · 8 claims · 5 setups

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The GSK3B intronic polymorphism IVS2-68G>A is associated with increased risk of AD and FTD in a case-control cohort

genomic case-control family-based sib-pair pcr allele-specific fluorescence-polarization
High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays.

PMID 18786630 · PMC2659594 · Genomics · 2008 · 8 claims · 7 setups

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WGA product performs well on the Affymetrix 250K SNP array compared to genomic DNA, especially with the BRLMM calling algorithm.

genomic whole-genome same call snp technical genotype
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.

PMID 30010758 · PMC6065499 · GigaScience · 2018 · 8 claims · 6 setups

Has reproduction · 91

A draft genome (Ogye_1.1) was assembled using a hybrid de novo method combining high-depth Illumina short reads (376.6X) and low-depth PacBio long reads (9.7X)

yeonsan ogye_1.1 locus tissues whole-genome genome structural
Human Retrotransposons and Effective Computational Detection Methods for Next-Generation Sequencing Data.

PMID 36295018 · PMC9605557 · Life (Basel, Switzerland) · 2022 · 8 claims · 7 setups

Has reproduction

Transposable elements make up nearly 45% of the human genome, vastly exceeding the ~1.5% that is protein-coding.

genome normal drosophila long short-read whole-genome synthetic
Analysis of chimpanzee history based on genome sequence alignments.

PMID 18421364 · PMC2278377 · PLoS genetics · 2008 · 8 claims · 6 setups

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Bonobos and common chimpanzees separated approximately 1.29 million years ago

bonobo bonobos chimpanzee simulated shotgun sequenom principal
Detection of BRAF mutations in the tumour and serum of patients enrolled in the AZD6244 (ARRY-142886) advanced melanoma phase II study.

PMID 19861964 · PMC2778539 · British journal of cancer · 2009 · 7 claims · 8 setups

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BRAF mutations can be detected in serum cfDNA of advanced melanoma patients using an ARMS allele-specific PCR assay

serum-derived tumour serum ht29 arms sanger topo
Aryl hydrocarbon receptor nuclear translocator (ARNT) gene as a positional and functional candidate for type 2 diabetes and prediabetic intermediate traits: Mutation detection, case-control studies, and gene expression analysis.

PMID 18366646 · PMC2323364 · BMC medical genetics · 2008 · 7 claims · 8 setups

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Common ARNT variants are not associated with type 2 diabetes in European American or African American case-control cohorts

european african individuals nondiabetic snp variant direct

Experiments

Complex landscapes of somatic rearrangement in human breast cancer genomes.

Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate.

Completing the map of human genetic variation.

Association of GSK3B with Alzheimer disease and frontotemporal dementia.

High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays.

Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.

Human Retrotransposons and Effective Computational Detection Methods for Next-Generation Sequencing Data.

Analysis of chimpanzee history based on genome sequence alignments.

Detection of BRAF mutations in the tumour and serum of patients enrolled in the AZD6244 (ARRY-142886) advanced melanoma phase II study.

Aryl hydrocarbon receptor nuclear translocator (ARNT) gene as a positional and functional candidate for type 2 diabetes and prediabetic intermediate traits: Mutation detection, case-control studies, and gene expression analysis.