Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• A map of human protein interactions derived from co-expression of human mRNAs and their orthologs.

  PMID 18414481 · PMC2387231 · Molecular systems biology · 2008 · 8 claims · 6 setups

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  Comparing human mRNA co-expression with co-expression of orthologous gene pairs in five other organisms identifies proteins that physically associate

  genes hela proteins worm co-expression quantitative functional

• PHScaffolding: a hypergraph clustering and dual-weight integration strategy for scaffolding with Pore-C reads.

  PMID 41569288 · PMC12825295 · Briefings in bioinformatics · 2026 · 7 claims · 6 setups

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  PHScaffolding builds a weighted hypergraph from Pore-C read-to-contig alignments, with hyperedges representing multi-way contig interactions and weighted by the geometric mean of per-contig alignment lengths

  hg002 gm12878 arabidopsis contig pore-c genome hypergraph

• Genomic variability within an organism exposes its cell lineage tree.

  PMID 16261192 · PMC1274291 · PLoS computational biology · 2005 · 8 claims · 5 setups

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  Somatic mutations accumulated during normal development implicitly encode an organism's entire cell lineage tree with very high precision.

  robinia arabidopsis randomly genotyping multiplex computer