Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: frozen ✕ Assay: distance ✕ Clear

Protein expression patterns in primary carcinoma of the vagina.

PMID 15199389 · PMC2409807 · British journal of cancer · 2004 · 5 claims · 4 setups

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Cluster analysis of 2-DE proteomic data allows accurate discrimination between normal vaginal mucosa, primary vaginal carcinoma and primary cervical carcinoma

fresh-frozen excised normal same two-dimensional matrix-assisted hierarchical
BiRNA-BERT allows efficient RNA language modeling with adaptive tokenization.

PMID 41266599 · PMC12635123 · Communications biology · 2025 · 8 claims · 8 setups

Has reproduction · 50

BiRNA-BERT uses adaptive dual-tokenization that dynamically selects nucleotide-level (NUC) or byte-pair encoding (BPE) tokens based on input sequence length

rfam plant lncrna-mirna sequences unsupervised mirna-lncrna length-binned
Modeling nascent transcription from chromatin landscape and structure with CLASTER.

PMID 41691282 · PMC13011747 · Genome biology · 2026 · 7 claims · 8 setups

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CLASTER, a deep neural network combining chromatin landscape tracks and 3D contact maps, accurately predicts kilobasepair-resolution nascent RNA (EU-seq) profiles in a DNA-sequence-agnostic manner

embryonic mescs chromatin k562 eu-seq chip-seq micro-c
Patient-derived orthotopic xenograft models recapitulate the peritoneal dissemination of pancreatic cancer and delineate its transcriptional and regulatory programs.

PMID 41673768 · PMC12998334 · Journal of experimental & clinical cancer research : CR · 2026 · 6 claims · 8 setups

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Organoids derived from malignant effusions of PDAC patients reproducibly generate peritoneal metastases after orthotopic implantation into the pancreas of immunodeficient mice

pdac organoids frozen pdox orthotopic single-nucleus single-cell

Experiments

Protein expression patterns in primary carcinoma of the vagina.

BiRNA-BERT allows efficient RNA language modeling with adaptive tokenization.

Modeling nascent transcription from chromatin landscape and structure with CLASTER.

Patient-derived orthotopic xenograft models recapitulate the peritoneal dissemination of pancreatic cancer and delineate its transcriptional and regulatory programs.