Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 6

System / cell line: controls ✕ Assay: duplicate ✕ Clear

Sources of variability and effect of experimental approach on expression profiling data interpretation.

PMID 11936955 · PMC65691 · BMC bioinformatics · 2002 · 8 claims · 7 setups

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Intra-patient tissue heterogeneity (different regions of the same biopsy) is often the greatest source of variability in expression profiling

skeletal muscle spleen myogenic affymetrix duplicate unsupervised
Association between the catechol-O-methyltransferase Val158Met polymorphism and cocaine dependence.

PMID 18704099 · PMC2583214 · Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2008 · 8 claims · 4 setups

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The COMT Val158Met polymorphism is significantly associated with cocaine dependence in individuals of African descent.

cocaine-dependent duplicate genotype study snp genotype haplotype
Integrated multi-level quality control for proteomic profiling studies using mass spectrometry.

PMID 19055809 · PMC2657802 · BMC bioinformatics · 2008 · 7 claims · 5 setups

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QC processes for identifying and removing low-quality spectra are often overlooked in proteomic profiling studies

serum pooled duplicate full seldi-tof principal technical
A hierarchical and modular approach to the discovery of robust associations in genome-wide association studies from pooled DNA samples.

PMID 18194558 · PMC2248205 · BMC genetics · 2008 · 8 claims · 5 setups

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A hierarchical/modular approach integrating quality control, LD, physical distance, and gene ontology identifies authentic associations among those found by statistical tests in pooled DNA GWAS

pooled sickle centenarian snp pooled gene
Gene expression profile of cervical tissue compared to exfoliated cells: impact on biomarker discovery.

PMID 15876354 · PMC1164412 · BMC genomics · 2005 · 8 claims · 5 setups

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The gene expression profile of exfoliated cervical cells partially represents that of cervical tissue

exfoliated normal gene cin3 genome microarray gene
Genomic variation in myeloma: design, content, and initial application of the Bank On A Cure SNP Panel to detect associations with progression-free survival.

PMID 18778477 · PMC2553089 · BMC medicine · 2008 · 7 claims · 7 setups

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A custom BOAC SNP panel of 3404 SNPs in 983 genes was developed using the Affymetrix GeneChip Targeted Genotyping Platform, focused on non-synonymous coding SNPs and regulatory-region SNPs in candidate genes.

coriell myeloma duplicate snp targeted genotyping machine

Experiments

Sources of variability and effect of experimental approach on expression profiling data interpretation.

Association between the catechol-O-methyltransferase Val158Met polymorphism and cocaine dependence.

Integrated multi-level quality control for proteomic profiling studies using mass spectrometry.

A hierarchical and modular approach to the discovery of robust associations in genome-wide association studies from pooled DNA samples.

Gene expression profile of cervical tissue compared to exfoliated cells: impact on biomarker discovery.

Genomic variation in myeloma: design, content, and initial application of the Bank On A Cure SNP Panel to detect associations with progression-free survival.