Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials.

  PMID 33558569 · PMC7870661 · Scientific data · 2021 · 8 claims · 6 setups

  Has reproduction · 94

  A unified, easily accessible, reusable collection of ENM transcriptomics data was lacking prior to this work despite large amounts of existing data

  enms gene rna-sequencing dynamic

• AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression.

  PMID 27082953 · PMC4833304 · PLoS computational biology · 2016 · 7 claims · 6 setups

  Has reproduction · 88

  Sample-sample correlation of transcript abundances is a misleading measure of replicability for assessing differential expression, because it is dominated by gene-specific dynamic ranges rather than condition-dependent variation.

  liver encode publicly co-expressed rna-seq meta-analysis computational