Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Estimating sparse regression models in multi-task learning and transfer learning through adaptive penalisation.

  PMID 40674582 · PMC12502914 · Bioinformatics (Oxford, England) · 2025 · 8 claims · 3 setups

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  A two-stage procedure using feature-specific and sign-specific adaptive weights shares information on feature selection, effect direction, and effect size between related regression problems.

  simulated multi-task penalised adaptive hyperparameter

• scTWAS: a powerful statistical framework for single-cell transcriptome-wide association studies.

  PMID 41820391 · PMC13121454 · Nature communications · 2026 · 8 claims · 5 setups

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  scTWAS uses a latent-variable expression-measurement model combined with a moment-based regression to more accurately estimate genetic regulation of gene expression from single-cell data, improving GReX prediction across cell types and datasets

  onek1k-derived onek1k-based immune brain simulated two-sample stage

• SpaPheno: linking spatial transcriptomics to clinical phenotypes with interpretable machine learning.

  PMID 41975540 · PMC13185361 · Genome medicine · 2026 · 8 claims · 8 setups

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  SpaPheno integrates spatial transcriptomics with clinically annotated bulk RNA-seq to identify spatially resolved biomarkers predictive of patient outcomes including survival, tumor stage, and immunotherapy response

  cortex liver clear breast spatial elastic