Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• InSituPREP enables 3D single-cell mapping of interaction-associated gene programs in the breast cancer tumor microenvironment.

  PMID 42109251 · PMC13158666 · Nucleic acids research · 2026 · 8 claims · 6 setups

  Full-text index only

  InSituPREP is a computational framework that quantifies proximity-associated gene programs across multiple analytical layers (binary contacts, graded distance, density, triplets, RNA velocity) in 3D single-cell spatial data

  breast adjacent exseq-imaged exseq-derived expansion 16s scrna-seq

• Neuroscience in the era of functional genomics and systems biology.

  PMID 19829370 · PMC3645852 · Nature · 2009 · 8 claims · 7 setups

  Full-text index only

  Omics/discovery-based approaches do not eschew hypotheses but elevate hypothesis testing to high-throughput hypothesis generation and prioritization.

  developing hippocampus bac-transgenic fetal situ gene bac-transgenic