Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Trajectory-guided dimensionality reduction for multi-sample single-cell RNA-seq data reveals biologically relevant sample-level heterogeneity.

  PMID 42024616 · PMC13188987 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 6 setups

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  MUSTARD is a trajectory-guided dimensionality reduction method for multi-sample, multi-condition scRNA-seq data that simultaneously captures gene expression variation along pseudotime and across samples

  simulated covid-su covid-stephenson tuberculosis data-driven scrna-seq pseudobulk-pca

• The key role of genomics in modern vaccine and drug design for emerging infectious diseases.

  PMID 19855822 · PMC2752168 · PLoS genetics · 2009 · 8 claims · 8 setups

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  Reverse vaccinology (in silico genome screening for surface/secreted proteins) can identify vaccine candidates far faster than conventional approaches, as demonstrated by the MenB project.

  neisseria streptococcus coli vibrio reverse pan-genomic comparative