Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• MZPAQ: a FASTQ data compression tool.

  PMID 31171931 · PMC6547476 · Source code for biology and medicine · 2019 · 8 claims · 4 setups

  Has reproduction · 58

  MZPAQ, a hybrid of MFCompress and ZPAQ, achieves the highest compression ratio compared to all evaluated state-of-the-art and general-purpose tools on all benchmark datasets.

  mpeg fastq read quality

• MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.

  PMID 32256520 · PMC7089958 · Frontiers in genetics · 2020 · 7 claims · 8 setups

  Has reproduction · 50

  MasterOfPores is a NextFlow-based, containerized workflow that processes raw FAST5 direct RNA sequencing data through base-calling, demultiplexing, filtering, QC, mapping, and quantification, plus downstream RNA modification and polyA tail length analyses.

  saccharomyces cerevisiae barcoded direct base-calling read