Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• A bioinformatics pipeline for a tick pathogen surveillance multiplex amplicon sequencing assay.

  PMID 37247570 · PMC10878300 · Ticks and tick-borne diseases · 2023 · 7 claims · 3 setups

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  The MPAS pipeline is a portable, reproducible Nextflow-based bioinformatics pipeline that identifies and summarizes amplicon sequences produced by the MPAS assay.

  host-seeking mpas same targeted mpas clc

• RNA-SeqEZPZ: a point-and-click pipeline for comprehensive transcriptomics analysis with interactive visualizations.

  PMID 41222189 · PMC12857227 · GigaScience · 2026 · 8 claims · 8 setups

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  RNA-SeqEZPZ is the first open-source tool offering a point-and-click interface with interactive plots, spanning raw FASTQ reads through differential gene and pathway analysis.

  generic paired-end aligned gene bulk adapter read

• GermVarX: A Robust Workflow for Joint Germline Variant Exploration in whole-exome sequencing cohorts.

  PMID 41926483 · PMC13046259 · PloS one · 2026 · 8 claims · 8 setups

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  GermVarX is a fully automated, modular Nextflow DSL2 workflow for joint germline variant discovery and exploration in WES cohort studies

  ashkenazim paired-end consensus multi-sample joint germline consensus