Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 9

System / cell line: similarity ✕ Assay: flow ✕ Clear

Generation of thymus-reconstituting T cell progenitors from human pluripotent stem cells.

PMID 41512861 · PMC12853186 · Cell reports methods · 2026 · 7 claims · 6 setups

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A cytokine-free hPSC hematopoietic differentiation protocol followed by OP9-DLL4 stromal co-culture generates pro-T cells without genetic manipulation

hpsc hescs hpsc-hec-derived sorted flow tcr single-cell
Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes.

PMID 7606775 · PMC3730239 · Cell · 1995 · 6 claims · 8 setups

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Expression of a specific var gene (A4var) correlates with A4 antigenic type and with binding to ICAM-1

falciparum cdna c18 genomic rt-pcr southern genomic
Identification and comparison of orthologous cell types from primate embryoid bodies shows limits of marker gene transferability.

PMID 41949281 · PMC13061419 · eLife · 2026 · 7 claims · 6 setups

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Human marker genes are less effective in macaques and vice versa, showing limited transferability of markers across species.

ipsc-derived day integrated ipscs scrna-seq flow immunofluorescence
Uropathogenic Escherichia coli invade luminal prostate cells via FimH-PPAP receptor binding.

PMID 41507584 · PMC12872464 · Nature microbiology · 2026 · 8 claims · 8 setups

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A 2D mouse stem cell-derived prostate epithelial organoid model was developed that mimics epithelial heterogeneity of the murine prostate

prostate bladder immunofluorescence single-cell transepithelial
Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.

PMID 25273863 · PMC4267930 · G3 (Bethesda, Md.) · 2014 · 8 claims · 6 setups

Has reproduction · 58

Revised RNA-seq-based gene models for D. ananassae, D. yakuba, and D. simulans include UTRs, empirically verified intron-exon boundaries, and previously unannotated novel exons, improving on r1.3 comparative-genomics annotations that lack UTRs.

dissected concatenated yakuba reference whole-transcriptome novo read
Integrative CSF profiling identifies disease-specific immune responses in leptomeningeal disease.

PMID 41794040 · PMC13006398 · Cell reports. Medicine · 2026 · 8 claims · 8 setups

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CSF exhibits distinct, disease-specific immune landscapes across CNSL, BrMs, and GB-associated LMD

csf peripheral brain cell-free single-cell deep spatial
PD-1 antibody-bound progenitor-exhausted CD8(+) T cells in lymph nodes boost PD-1-blockade anti-tumor immunity in gastrointestinal cancer.

PMID 41951588 · PMC13237225 · Nature communications · 2026 · 8 claims · 6 setups

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Progenitor-exhausted CD8+ T cells (CD8-Tpex, TCF7+PDCD1+) are enriched in proximal lymph nodes and proliferate at a high rate after ICI treatment

esophagogastric cancer surgically tcga scrna-seq scrna reanalysis
Single-cell transcriptomics reveals maturation of transplanted stem cell-derived retinal pigment epithelial cells toward native state.

PMID 37339216 · PMC10293804 · Proceedings of the National Academy of Sciences of the United States of America · 2023 · 8 claims · 8 setups

Has reproduction · 59

Subretinally transplanted stem cell-derived RPE (ESC- and iPSC-derived) retain RPE identity and survive in vivo for at least 30 days in immunocompetent rabbit eyes

hpsc-derived day esc dutch qrt-pcr immunofluorescence transepithelial
OptiSyn: an interpretable, multi-omics-driven graph convolutional network framework for synergy-oriented drug combination design in disease treatment.

PMID 41877167 · PMC13011277 · Chinese medicine · 2026 · 8 claims · 8 setups

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Eight AS-associated hub genes were identified through integration of multi-omics datasets (DEG analysis, WGCNA, scRNA-seq, Mendelian randomization, PPI module analysis)

gtex as-associated tcm representative differential weighted single-cell

Experiments

Generation of thymus-reconstituting T cell progenitors from human pluripotent stem cells.

Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes.

Identification and comparison of orthologous cell types from primate embryoid bodies shows limits of marker gene transferability.

Uropathogenic Escherichia coli invade luminal prostate cells via FimH-PPAP receptor binding.

Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.

Integrative CSF profiling identifies disease-specific immune responses in leptomeningeal disease.

PD-1 antibody-bound progenitor-exhausted CD8(+) T cells in lymph nodes boost PD-1-blockade anti-tumor immunity in gastrointestinal cancer.

Single-cell transcriptomics reveals maturation of transplanted stem cell-derived retinal pigment epithelial cells toward native state.

OptiSyn: an interpretable, multi-omics-driven graph convolutional network framework for synergy-oriented drug combination design in disease treatment.