Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Determinants of human immunodeficiency virus type 1 escape from the primary CD8+ cytotoxic T lymphocyte response.

  PMID 15545352 · PMC2211924 · The Journal of experimental medicine · 2004 · 7 claims · 4 setups

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  CD8+ CTL responses contribute to containment of viral replication in acute/early HIV-1 infection, and HIV-1 rapidly selects escape variants within epitope-containing regions beginning within weeks of infection.

  pbmcs autologous vaccinia plasma ifn-γ 51cr recombinant

• Amplicon sequencing with Oxford nanopore technologies as a diagnostic alternative for small ruminant lentiviruses in sheep.

  PMID 41582101 · PMC12905341 · Scientific reports · 2026 · 7 claims · 8 setups

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  Nanopore amplicon sequencing of blood DNA reduces false negatives compared to ELISA (42%) and qPCR (77%)

  blood sheep blood-derived pbmc-enriched qpcr elisa nanopore

• Microglia cause HIV-induced transcriptional and metabolic changes in human neural organoids.

  PMID 41857366 · PMC13021996 · Communications biology · 2026 · 8 claims · 7 setups

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  Microglia are essential for driving HIV-induced transcriptional changes and neuroinflammation in neural organoids

  hipsc-derived neural mno supernatant flow elisa immunocytochemistry

• Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers.

  PMID 36373634 · PMC9723646 · Nucleic acids research · 2022 · 8 claims · 8 setups

  Has reproduction · 68

  Specific splice variants of Mod(mdg4) repress HeT-A by blocking subtelomeric enhancers in ovarian somatic cells (OSCs)

  drosophila ovarian osc melanogaster chip-seq sirna western

• Loss of mutual protection between human osteoclasts and chondrocytes in damaged joints initiates osteoclast-mediated cartilage degradation by MMPs.

  PMID 34811438 · PMC8608887 · Scientific reports · 2021 · 8 claims · 8 setups

  Has reproduction · 50

  Human osteoclasts differentiate on cartilage, expressing osteoclast markers, and visibly damage the cartilage surface without forming resorption pits or F-actin rings as seen on dentine.

  cd14+ osteoclasts conditioned osteoclast gag direct

• Widely variable endogenous retroviral methylation levels in human placenta.

  PMID 17617638 · PMC1950553 · Nucleic acids research · 2007 · 6 claims · 6 setups

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  Three HERV-E LTRs that function as alternative gene promoters (LTR-PTN, LTR-EBR, LTR-MID1) are unmethylated in placenta but heavily methylated in blood cells, where they are not active promoters

  term placenta genome bisulfite rt-pcr genome-wide

• Multiomic analysis of ART-interruption cohorts identifies cell-extrinsic and -intrinsic mechanisms driving lymphocyte-mediated control of HIV rebound.

  PMID 41864210 · PMC13245417 · Immunity · 2026 · 8 claims · 8 setups

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  Delayed HIV rebound after ART interruption is not consistently associated with levels of intact HIV provirus across cohorts

  pbmcs cd4+ cytof gag cytof intact bulk