Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 6

System / cell line: apoptotic ✕ Assay: gel ✕ Clear

Methods for the proteomic identification of protease substrates.

PMID 19729334 · PMC2787889 · Current opinion in chemical biology · 2009 · 8 claims · 8 setups

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Gel-based methods (2D-DiGE, diagonal electrophoresis, PROTOMAP) identify protease substrates by comparing proteolyzed versus control samples via electrophoretic migration differences followed by MS identification

lysate jurkat apoptotic yeast 2d-dige protomap cofradic
Human neuronal cell protein responses to Nipah virus infection.

PMID 17553172 · PMC1896155 · Virology journal · 2007 · 8 claims · 4 setups

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NiV infection induces differential protein expression in SK-N-MC human neuronal cells detectable by 2D-PAGE

sk-n-mc spots 2d-page maldi-tof tandem
Anesthetics impact the resolution of inflammation.

PMID 18382663 · PMC2268966 · PloS one · 2008 · 8 claims · 8 setups

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Lidocaine delays and blocks key events in the resolution of acute inflammation

peritoneal cell-free zymosan-induced lipid apoptosis
Protein isoaspartate methyltransferase prevents apoptosis induced by oxidative stress in endothelial cells: role of Bcl-Xl deamidation and methylation.

PMID 18806875 · PMC2532751 · PloS one · 2008 · 8 claims · 8 setups

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PCMT overexpression protects porcine aortic endothelial cells (PAEC) from H2O2-induced apoptosis, raising the threshold H2O2 concentration required to trigger cell death.

porcine paec umbilical huvec methyltransferase sds-page fragmentation
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.

PMID 19094223 · PMC2646283 · Genome biology · 2008 · 8 claims · 8 setups

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KEGG spider, using a global 'pathway-free' metabolic network framework, provides deeper insight into metabolism variations than existing enrichment-based methods.

diffuse-type liver renal anaplastic differential proteomic proteomics
Comparative proteomic analysis of malformed umbilical cords from somatic cell nuclear transfer-derived piglets: implications for early postnatal death.

PMID 19889237 · PMC2783166 · BMC genomics · 2009 · 8 claims · 8 setups

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scNT-MUC exhibit complete occlusive thrombi and absence of columnar epithelial layers not seen in control or scNT-N umbilical cords

umbilical porcine puvec histology immunostaining real-time

Experiments

Methods for the proteomic identification of protease substrates.

Human neuronal cell protein responses to Nipah virus infection.

Anesthetics impact the resolution of inflammation.

Protein isoaspartate methyltransferase prevents apoptosis induced by oxidative stress in endothelial cells: role of Bcl-Xl deamidation and methylation.

KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.

Comparative proteomic analysis of malformed umbilical cords from somatic cell nuclear transfer-derived piglets: implications for early postnatal death.