Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Full-text index only
scLong: a billion-parameter foundation model for capturing long-range gene context in single-cell transcriptomics.
PMID 41639087 · PMC12982784 · Nature communications · 2026 · 7 claims · 4 setups
scLong performs self-attention across all ~27,874 human genes, including lowly expressed ones, to capture long-range gene dependencies missed by models restricted to highly expressed gene subsets
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Has reproduction · 62
Metatranscriptomics of the human oral microbiome during health and disease.
PMID 24692635 · PMC3977359 · mBio · 2014 · 8 claims · 8 setups
Disease-associated periodontal communities display conserved community-level metabolic gene expression profiles between patients, whereas the metabolic gene expression of individual species is highly variable between patients.
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Full-text index only
Cell type-specific epigenetic regulatory circuitry of coronary artery disease loci.
PMID 41807385 · PMC12979833 · Nature communications · 2026 · 8 claims · 8 setups
Integration of CAD GWAS summary statistics with epigenetic data from 45 cell types identifies 1580 candidate CAD genes
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Has reproduction · 87
De Novo Transcriptome Meta-Assembly of the Mixotrophic Freshwater Microalga Euglena gracilis.
PMID 34072576 · PMC8227486 · Genes · 2021 · 7 claims · 8 setups
A new consensus transcriptome of E. gracilis was assembled by combining reads from five independent RNA-seq studies (23 samples)