Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Genome-wide reprogramming of sRNA and lncRNA in the epigenetic regulation following interspecific hybridization in the Brassica species.

  PMID 41668146 · PMC12892563 · Molecular horticulture · 2026 · 6 claims · 5 setups

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  Regulatory differences in sRNAs between the two F1 hybrids are mainly driven by maternal inheritance, with Hybrid-sh showing more maternal influence and Hybrid-yh showing transgressive regulation

  brassica s70 small strand-specific atac-seq

• Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.

  PMID 30010758 · PMC6065499 · GigaScience · 2018 · 8 claims · 6 setups

  Has reproduction · 91

  A draft genome (Ogye_1.1) was assembled using a hybrid de novo method combining high-depth Illumina short reads (376.6X) and low-depth PacBio long reads (9.7X)

  yeonsan ogye_1.1 locus tissues whole-genome genome structural

• lncEvo: automated identification and conservation study of long noncoding RNAs.

  PMID 33563213 · PMC7871587 · BMC bioinformatics · 2021 · 8 claims · 5 setups

  Has reproduction · 61

  lncEvo is an integrated Nextflow/Docker pipeline combining transcriptome assembly, lncRNA identification, and cross-species conservation analysis into a single workflow.

  chimp assembled pairwise raw bulk lncrna comparative

• Bioinformatic Analysis of Differentially Expressed Long Non-Coding RNAs in Skeletal Muscle Following Aerobic and Resistance Exercise.

  PMID 41595529 · PMC12840796 · Genes · 2026 · 8 claims · 3 setups

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  Distinct lncRNA expression profiles exist in skeletal muscle between acute AE and RE, suggesting modality-specific lncRNA roles in exercise adaptation.

  skeletal aggregated bulk database

• Long non-coding RNA profiling of hypertrophic cardiomyopathy in mice.

  PMID 41942516 · PMC13230700 · Scientific data · 2026 · 6 claims · 8 setups

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  This study presents a transcriptome-wide RNA-Seq dataset delineating differentially expressed lncRNAs in left ventricle of the TNNT2 ∆160 HCM mouse model (n=31 TG, n=33 nTG).

  left fastq rna-seq lncrna bulk fastqc read

• Blood Transcriptome Analysis of Septic Patients Reveals a Long Non-Coding Alu-RNA in the Complement C5a Receptor 1 Gene.

  PMID 35447887 · PMC9027897 · Non-coding RNA · 2022 · 6 claims · 7 setups

  Has reproduction · 64

  A computational pipeline intersecting immune gene coordinates with Alu element coordinates can identify candidate Alu-lncRNAs

  peripheral genome blood bulk illumina ion

• The long non-coding RNA landscape of endurance exercise training.

  PMID 42019922 · PMC13158426 · Molecular metabolism · 2026 · 8 claims · 8 setups

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  759 unique lncRNAs are differentially expressed across 18 rat tissues in response to 8 weeks of endurance training

  tissues wat differential kcnmb4os2 bulk fuzzy t-sne

• Pervasive enhanced transcription in inflammatory breast cancer tumors and PBMCs impacts RNA splicing and intronic RNAs in plasma.

  PMID 42066072 · PMC13134590 · Science advances · 2026 · 8 claims · 7 setups

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  TGIRT-seq of tumors, PBMCs, and plasma reveals widespread differences that distinguish IBC patients from non-IBC patients and healthy donors across breast cancer subtypes.

  ffpe pbmcs plasma frozen tgirt-seq differential principal