Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Mechanisms of gene regulation by SRCAP and H2A.Z.

  PMID 41792122 · PMC13087030 · Nature communications · 2026 · 8 claims · 8 setups

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  Acute SRCAP degradation causes rapid, genome-wide replacement of H2A.Z by canonical H2A, with turnover fastest at active promoters/enhancers and slower at bivalent loci

  syat cut&run live h2a.z

• Bromodomain protein IBD1 bridges histone acetylation and H2A.Z deposition to fine-tune transcription.

  PMID 41728948 · PMC12926916 · Nucleic acids research · 2026 · 8 claims · 8 setups

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  IBD1's bromodomain recognizes H3K9/K14 di-acetylation to recruit the SWR complex subunit ARP6, ensuring precise H2A.Z incorporation into chromatin

  tetrahymena recombinant native cut&tag sequencing

• Chromatin state dynamics during the Plasmodium falciparum intraerythrocytic development cycle.

  PMID 41501628 · PMC12870380 · BMC genomics · 2026 · 8 claims · 6 setups

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  ChromHMM integration of 7 histone marks/variants, ATAC-seq accessibility, and HP1 ChIP-seq across ring, trophozoite, and schizont stages defines 11 chromatin states as optimal for the P. falciparum genome at 200 bp resolution

  plasmodium chip-seq atac-seq chromhmm

• Chromatin state architecture governs transcription factor accessibility across plant genomes.

  PMID 41570051 · PMC12867329 · PLoS genetics · 2026 · 8 claims · 8 setups

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  Chromatin states show a large degree of functional conservation between Arabidopsis thaliana and Marchantia polymorpha across more than 450 million years of land plant evolution

  arabidopsis marchantia chromhmm atac-seq antibody-based

• Characterization of the human DYRK1A promoter and its regulation by the transcription factor E2F1.

  PMID 18366763 · PMC2292204 · BMC molecular biology · 2008 · 8 claims · 8 setups

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  Transcription start sites of human DYRK1A are distributed over an 800 bp region within an unmethylated CpG island

  pc3 saos2 resting phoenix 5'-race-pcr rt-pcr chip-seq

• Nonsense-mediated mRNA decay orchestrates neuronal migration and cortical lamination while modulating Reelin and ciliary gene regulatory networks.

  PMID 41746809 · PMC13042203 · Cell reports · 2026 · 8 claims · 8 setups

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  UPF2-mediated NMD is required for proper cortical lamination; conditional Upf2 deletion in radial glia disrupts layering of TBR1+/SATB2+ and CTIP2+/CUX1+ neurons.

  cortex embryonic cortical neural immunofluorescence utero co-electroporation