Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Architectural and evolutionary features of TE-derived TSSs shape tissue-specific promoter activity in the human genome.
PMID 41620470 · PMC12963367 · Nature communications · 2026 · 8 claims · 8 setups
A three-step RAMPAGE-based pipeline can systematically identify TE-derived transcription start sites (TSSs) genome-wide, distinguishing them from autonomous TE transcription and background noise.
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CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes.
PMID 19854943 · PMC2800233 · Nucleic acids research · 2010 · 8 claims · 6 setups
Functional ('bona fide') CGIs show distinct average/cumulative mutual information (AMI/CMI) distributions of neighboring CpG distances compared to non-functional CGIs and random genome segments
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Genetic alternative splicing regulation mapping of cartilage and synovium reveals tissue-specific mechanisms of joint-related traits.
PMID 41820402 · PMC13121699 · Nature communications · 2026 · 8 claims · 8 setups
Generated a splicing quantitative trait loci (sQTL) resource for human cartilage and synovium from over 200 donors
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Boosting the detection of enhancer-promoter loops via normalization methods for chromatin interaction data.
PMID 41633996 · PMC12976324 · Nature communications · 2026 · 8 claims · 8 setups
ICE and KR matrix balancing normalization methods over-correct and attenuate low-frequency enhancer-promoter loop signals despite preserving structural (CTCF-mediated) loops