Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• ImmuSeeker: deep mining of immune-related gene family signatures through lineage reconstruction.

  PMID 41888873 · PMC13154904 · Genome biology · 2026 · 8 claims · 6 setups

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  ImmuSeeker leverages the phylogenetic structure of HLA/KIR alleles in its alignment and filtering strategy to improve accuracy and robustness of immune gene signature detection

  a549 rna-seq covid-19 autoimmune bulk iso-seq rna-seq

• Immunopeptidome profiling in pulmonary fibrosis provides a platform for identifying therapeutic targets.

  PMID 42010059 · PMC13132728 · Nature immunology · 2026 · 6 claims · 8 setups

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  IPF fibrotic lung tissue shows an expanded and distinct HLA class I immunopeptidome compared to non-IPF lung tissue, enriched for peptides from fibroblast/macrophage-derived proteins involved in tissue remodeling

  ipf tabula lung blm hla high-resolution scrna-seq