Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Rbfox2 controls autoregulation in RNA-binding protein networks.

  PMID 24637117 · PMC3967051 · Genes & development · 2014 · 8 claims · 8 setups

  Has reproduction · 48

  Rbfox2 cross-regulates AS-NMD events within RNA-binding protein genes to alter their expression, tuning autoregulatory splicing networks and placing Rbfox2 at a critical node of a multilayer regulatory network.

  v6.5 fhfox2 top introns iclip sequencing rt-pcr

• A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism.

  PMID 37013995 · PMC10164587 · Nucleic acids research · 2023 · 7 claims · 5 setups

  Has reproduction · 72

  Extending computational analysis of hiCLIP data (recovering truncated-linker hybrids, direct proximity ligation hybrids without a linker, and short-loop non-hybrid duplexes) increases identified STAU1 duplexes ~10-fold over the original analysis

  hek293t hela hiclip paris ric-seq