Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: four ✕ Assay: immunofluorescence ✕ Clear

Transcriptomic and phenotypic convergence of neurodevelopmental disorder risk genes in vitro and in vivo.

PMID 42032432 · PMC13156037 · Nature neuroscience · 2026 · 6 claims · 6 setups

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Transcriptomic convergence following NDD gene knockout is highly cell-type-specific and strongest in mature glutamatergic neurons (iGLUTs)

hipsc-derived gwas computational zebrafish single-cell immunofluorescence magma
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

PMID 22955991 · PMC3431496 · Genome research · 2012 · 8 claims · 8 setups

Has reproduction · 74

ENCODE/modENCODE define a set of working standards and guidelines for ChIP-seq covering antibody validation, experimental replication, sequencing depth, data/metadata reporting, and data quality assessment.

small-genome nuclear whole-cell encode chip-seq chip-chip immunoblot
Identification and comparison of orthologous cell types from primate embryoid bodies shows limits of marker gene transferability.

PMID 41949281 · PMC13061419 · eLife · 2026 · 7 claims · 6 setups

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Human marker genes are less effective in macaques and vice versa, showing limited transferability of markers across species.

ipsc-derived day integrated ipscs scrna-seq flow immunofluorescence
Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies.

PMID 19946270 · PMC4002225 · Nature genetics · 2010 · 8 claims · 8 setups

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PARK2 is a frequently and specifically targeted gene within recurrent 6q25.2-q27 copy number losses in glioblastoma and colon cancer

colon gbm cancer dbtrg array pcr colony

Experiments

Transcriptomic and phenotypic convergence of neurodevelopmental disorder risk genes in vitro and in vivo.

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Identification and comparison of orthologous cell types from primate embryoid bodies shows limits of marker gene transferability.

Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies.