Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Cis-regulatory evolution shapes facial diversity in birds and mammals.
PMID 42090501 · PMC13148318 · Science advances · 2026 · 8 claims · 6 setups
Mesenchymal populations show markedly greater transcriptomic/regulatory divergence between mouse and chicken than ectodermal populations, pointing to a central role of mesenchyme in shaping facial morphology
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Integrated multi-omic atlas reveals the hierarchy of spatiotemporal regulatory networks of mouse gastrulation.
PMID 41526381 · PMC12902073 · Nature communications · 2026 · 8 claims · 8 setups
BioCRE, a novel bi-orientation regression algorithm, more accurately links genes to candidate cis-regulatory elements (CREs) than existing tools Signac and ArchR
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scDEBGCL: a deep embedding approach based on bipartite graph contrastive learning for single-cell RNA-seq data.
PMID 41981652 · PMC13188691 · BMC biology · 2026 · 7 claims · 3 setups
scDEBGCL is a deep embedding method for scRNA-seq data based on bipartite graph contrastive learning, integrating contrastive learning, graph reconstruction, and ZINB-based data reconstruction losses.
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Benchmarking tools for deciphering cellular crosstalk in spatially-resolved transcriptomics.
PMID 41952215 · PMC13174004 · Genome biology · 2026 · 8 claims · 5 setups
No prior systematic, quantitative benchmark exists for CCI inference methods specifically developed for spatial transcriptomics across multiple platforms