Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Reconstruction of human protein interolog network using evolutionary conserved network.
PMID 17493278 · PMC1885812 · BMC bioinformatics · 2007 · 8 claims · 7 setups
A relative conservation score derived from maximal quasi-cliques in protein interaction networks, combined with other interaction features, can score and rank predicted human interologs for confidence.
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InParanoid 6: eukaryotic ortholog clusters with inparalogs.
PMID 18055500 · PMC2238924 · Nucleic acids research · 2008 · 8 claims · 3 setups
InParanoid 6 is an updated eukaryotic ortholog database covering 35 species (34 eukaryotes plus E. coli as outgroup), providing pairwise ortholog clusters with inparalogs for all species pairs.
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Evolutionary sequence analysis of complete eukaryote genomes.
PMID 15762985 · PMC1274250 · BMC bioinformatics · 2005 · 8 claims · 6 setups
A conservative genome-comparison method (MIA) identifies panorthologs — strict single-copy 1:1 orthologs containing only species divergences, no paralogy — to minimize errors from gene duplication in evolutionary sequence analysis.
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Evolutionary origins of human apoptosis and genome-stability gene networks.
PMID 18832373 · PMC2577361 · Nucleic acids research · 2008 · 8 claims · 8 setups
The entanglement of DNA repair, chromosome stability and apoptosis gene networks appears with the caspase gene family and the antiapoptotic gene BCL2.