Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: pancreas ✕ Assay: integration ✕ Clear

Multi-species integration, alignment and annotation of single-cell RNA-seq data with CAMEX.

PMID 41723123 · PMC13035843 · Nature communications · 2026 · 8 claims · 6 setups

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CAMEX outperforms state-of-the-art integration methods on cross-species scRNA-seq benchmarking datasets ranging from one to eleven species

liver ovary pancreas testis scrna-seq type
GeneTide--Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases.

PMID 15608261 · PMC540076 · Nucleic acids research · 2005 · 8 claims · 7 setups

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GeneTide integrates UniGene, DoTS, AceView, BLAT/GeneLoc genomic alignment, and GeneAnnot probe-set data into a unified Consensus/Uniqueness/Score scheme to associate ESTs with GeneCards genes

transcriptome genome spliced transcripts est genomic splice-orientation
Single-nucleus multiple-organ chromatin accessibility landscape in the adult rat.

PMID 41632074 · PMC12954174 · GigaScience · 2026 · 8 claims · 5 setups

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Generated a multi-organ snATAC-seq atlas of 9 adult rat organs comprising 25 libraries and over 110,000 cells

organs publicly snatac-seq group-level snatac-seq scrna-seq gene
CellPredX, a computational framework for cross-data type, cross-sample, and cross-protocol cell type annotation through domain adaptation and deep metric learning.

PMID 41481570 · PMC12758788 · PLoS computational biology · 2026 · 8 claims · 7 setups

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CellPredX is a unified semi-supervised framework integrating domain adaptation and deep metric learning to align heterogeneous embeddings for cross-modality cell type annotation.

pbmc fetal pancreas gse149683 matched unmatched cross-protocol

Experiments

Multi-species integration, alignment and annotation of single-cell RNA-seq data with CAMEX.

GeneTide--Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases.

Single-nucleus multiple-organ chromatin accessibility landscape in the adult rat.

CellPredX, a computational framework for cross-data type, cross-sample, and cross-protocol cell type annotation through domain adaptation and deep metric learning.