Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Integrative epigenetics and transcriptomics identify aging genes in human blood.

  PMID 41554691 · PMC12820199 · Nature communications · 2026 · 8 claims · 5 setups

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  Age-associated DNAm changes are considerably more replicable across cohorts than age-associated transcriptomic changes

  blood pbmc bulk methylation integrative

• A cross-scale multimodal framework identifies clinically actionable immunotherapy biomarkers in melanoma through bulk to single-cell and spatial transcriptomics integration.

  PMID 41840725 · PMC13104449 · Human genomics · 2026 · 7 claims · 8 setups

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  Multi-omics consensus clustering (MOVICS) identifies two distinct SKCM molecular subtypes, CS1 and CS2

  tcga-skcm meta-geo gtex melanoma multi-omics bulk transcriptome-wide

• Dynamics of intronic polyadenylation in the hematopoietic lineage and its regulation by DNA methylation.

  PMID 41974581 · PMC13262950 · Genome research · 2026 · 8 claims · 5 setups

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  IPAseek, a dynamic programming framework combining the PELT algorithm with CROPS, enables de novo identification of IPA events from bulk RNA-seq data.

  test k562 hematopoietic bulk 3'-race phase-contrast

• Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.

  PMID 36928603 · PMC10101853 · Nature genetics · 2023 · 8 claims · 6 setups

  Has reproduction · 80

  The WHO histopathological classification of MPM accounts for only up to ~10% of interpatient molecular differences

  mpm mesomics whole-genome bulk methylation