Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Molecular profiling of breast cancer in native American women reveals distinct genomic and transcriptomic features.

  PMID 41844957 · PMC13144316 · NPJ precision oncology · 2026 · 8 claims · 6 setups

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  This is the first multi-omics (mutation, CNV, RNA-seq) characterization of breast tumors from Native American women, providing a resource for future studies

  breast degs targeted panel-derived whole-transcriptome

• Caloric Restriction Reprograms Adipose Tissues in Rhesus Monkeys.

  PMID 41042069 · PMC12686577 · Aging cell · 2025 · 8 claims · 8 setups

  Has reproduction · 66

  At baseline, SAT and VAT transcriptomes are highly similar, with only ~1% of genes (30 genes, adjusted p<0.05) differentially expressed between depots in Controls

  subcutaneous sat rhesus bulk gsea xcell

• PFOS and PFOA exposure induces liver injury and sex-dependent immune effects in C57BL/6 mice.

  PMID 41641100 · PMC12865548 · iScience · 2026 · 7 claims · 7 setups

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  PFOA and PFOS exposure induces hepatotoxicity, including hepatomegaly and elevated serum liver injury biomarkers (ALP, ALT), across sexes and durations

  plasma liver serum thymus lc-ms organ serum

• Plasma protein biomarkers predictive of progression to active tuberculosis among close contacts of patients with tuberculosis.

  PMID 41852731 · PMC12992532 · iScience · 2026 · 8 claims · 8 setups

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  TB progressors show broad downregulation of plasma proteins related to immune regulation, cell adhesion, and nucleotide metabolism compared to non-progressors and healthy controls

  plasma daps common six-protein olink differential kegg

• How many human genes can be defined as housekeeping with current expression data?

  PMID 18416810 · PMC2396180 · BMC genomics · 2008 · 8 claims · 4 setups

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  Current EST and microarray transcriptome sampling is far from saturated, limiting gene detectability and understanding of tissue-specific expression

  tissues genes est microarray comparative

• GRIP-Lung: Generative Model of Response to Drug-Induced Perturbation in Lung Cancer.

  PMID 41977443 · PMC13072768 · International journal of molecular sciences · 2026 · 8 claims · 7 setups

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  GRIP-Lung, a GAN framework embedding cell-line identity and drug conditions, predicts drug-induced gene expression profiles in lung cancer cell lines

  lung nsclc a549 nci-60 bulk five-fold differential

• Optimizing Single-Cell Long-Read Sequencing for Enhanced Isoform Detection in Pancreatic Islets.

  PMID 41563441 · PMC13007207 · Diabetes · 2026 · 8 claims · 7 setups

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  5′ single-cell library preparation protocols outperform 3′ protocols for transcript identification and read length

  lines pancreatic spleen dtc single-cell bulk ngs

• Single-Cell Sequencing Reveals γδT Cell Heterogeneity Under Distinct Microsatellite Statuses as a Potential Biomarker for Immunotherapy and Prognosis in Colorectal Cancer.

  PMID 42074506 · PMC13116210 · Genes · 2026 · 7 claims · 8 setups

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  γδT cells in colorectal cancer form five distinct subsets (C0_FCER1G, C1_IL7R, C2_CD81, C3_TOP2A, C4_CXCL13) with distinct marker genes and functional states

  crc γδt epithelial c4_cxcl13 single-cell differential pseudotime