Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Novel peptide identification from tandem mass spectra using ESTs and sequence database compression.

  PMID 17437027 · PMC1865584 · Molecular systems biology · 2007 · 7 claims · 6 setups

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  Traditional protein-sequence-database search engines fail to identify peptides from alternative splicing and coding SNP isoforms despite acquisition of good-quality tandem mass spectra

  jurkat peptideatlas erythroleukemia plasma lc-ms

• Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics.

  PMID 19651622 · PMC2816010 · Molecular & cellular proteomics : MCP · 2009 · 7 claims · 4 setups

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  Less than 10% of quantified phosphopeptides showed a response pattern indicative of being direct targets of the MAPK inhibitors U0126 or SB202190.

  hela k562 quantitative