Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• A step forward for Shiga toxin-producing Escherichia coli identification and characterization in raw milk using long-read metagenomics.

  PMID 36748417 · PMC9836091 · Microbial genomics · 2022 · 8 claims · 6 setups

  Has reproduction · 75

  Long-read metagenomics enables isolation-independent identification and characterization of eae-positive STEC directly from raw milk.

  pure enriched stec-negative extracted ont real-time artificial

• Plasmid transmission dynamics and evolution of partner quality in a natural population of Rhizobium leguminosarum.

  PMID 41212030 · PMC12691615 · mBio · 2025 · 8 claims · 6 setups

  Has reproduction · 86

  Plasmid types II and III have more stable size, larger core genomes, and phylogenies that track the chromosome, indicating predominantly vertical transmission

  rhizobium extrachromosomal plasmidome gse long-read k-mer genome

• Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring.

  PMID 42038409 · PMC13107125 · NAR genomics and bioinformatics · 2026 · 7 claims · 7 setups

  Has reproduction · 78

  Long-read shotgun metagenomic sequencing of eDNA can simultaneously detect and quantify organismal DNA from viruses to mammals in a single assay

  river edna extracted raw edna concentration quantitative

• Telomere-to-telomere assembly of a complete human X chromosome.

  PMID 32663838 · PMC7484160 · Nature · 2020 · 8 claims · 8 setups

  Full-text index only

  Produced the first gapless, telomere-to-telomere assembly of a human chromosome (the X chromosome) using the CHM13 cell line

  chm13htert chm13 ultra-long-read pacbio linked-read

• The potato cyst nematode Globodera pallida overcomes major potato resistance through selection on standing variation at a single locus.

  PMID 41495958 · PMC12917471 · The New phytologist · 2026 · 7 claims · 8 setups

  Full-text index only

  GpaV^vrn, derived from Solanum vernei, is the major resistance source shared by all tested resistant commercial potato varieties, indicating a narrow genetic basis of potato resistance to G. pallida

  field pallida potato standard small serial

• Desert mycobiome of Saudi Arabia is driven by vegetation patterns.

  PMID 41909632 · PMC13022707 · MycoKeys · 2026 · 8 claims · 4 setups

  Full-text index only

  Fungal alpha diversity varies greatly across Saudi Arabia, with high diversity in moist montane habitats and very low diversity in hyper-arid regions

  composite sampling its soil remote-sensing

• Characterization of large rearrangements in autosomal dominant polycystic kidney disease and the PKD1/TSC2 contiguous gene syndrome.

  PMID 18818683 · PMC2756756 · Kidney international · 2008 · 8 claims · 8 setups

  Full-text index only

  Developed an MLPA assay with PKD1 exon 1-33 probes designed at single base-pair mismatches with the six PKD1 pseudogenes to achieve locus specificity

  blood-derived blood crisp father mlpa long-range field

• eDNAmap: A Metabarcoding Web Tool for Comparing Marine Biodiversity, With Special Reference to Teleost Fish.

  PMID 41189540 · PMC12627913 · Molecular ecology resources · 2026 · 6 claims · 5 setups

  Has reproduction · 59

  eDNAmap is a web-based platform that stores marine eDNA metabarcoding data and lets users plot sampling locations, generate heatmaps, and run nMDS/cluster analyses on uploaded or database species/ASV composition data.

  teleost dinoflagellates 12s asv edna blast phylogenetic

• TGFβ induces an atypical EMT to evade immune mechanosurveillance in lung adenocarcinoma dormant metastasis.

  PMID 41492090 · PMC12858408 · Nature cancer · 2026 · 7 claims · 8 setups

  Full-text index only

  TGFβ initially induces a full, typical EMT (stress fibers, loss of epithelial markers, motility) in dormancy-competent LUAD progenitors that subsequently transitions into an atypical spheroidal mesenchymal state lacking actin stress fibers.

  h2087-lcc m802t4-lcc reconstructed immunofluorescence antibody-mediated