Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 5

System / cell line: transcription ✕ Assay: machine ✕ Clear

All systems GO for understanding mouse gene function.

PMID 15610553 · PMC549721 · Journal of biology · 2004 · 7 claims · 4 setups

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Quantitative, multivariate cross-tissue expression measurements are powerfully predictive of gene function

diverse tissues computational dye-swap reverse-transcription-coupled support
Systematic annotation of orphan RNAs reveals blood-accessible molecular barcodes of cancer identity and cancer-emergent oncogenic drivers.

PMID 41579861 · PMC12923976 · Cell reports. Medicine · 2026 · 8 claims · 8 setups

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oncRNA binary presence-absence patterns constitute digital molecular barcodes that capture cancer type and subtype identity

tcga exrna cptac mda-mb-231 small machine atac-seq
Interpretable artificial intelligence based on immunoregulation-related genes predicts prognosis and immunotherapy response in lung adenocarcinoma.

PMID 41048340 · PMC12491262 · Frontiers in bioinformatics · 2025 · 8 claims · 8 setups

Has reproduction · 71

IRG expression pattern clusters LUAD patients into groups with significantly different survival outcomes and immune cell infiltration

luad normal bulk wgcna tumor
Cell-free DNA methylome and fragmentome analysis for relapse monitoring of Ewing sarcoma.

PMID 41792463 · PMC13084053 · EMBO molecular medicine · 2026 · 7 claims · 8 setups

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Combining cfDNA methylome (EwingSign) and fragmentome analysis detects all clinically confirmed relapse events in EwS/CIC patients

plasma cfdna t7-mbd-seq ichorcna fragment
Comprehensive bioinformatics analysis and experimental verification identify mitochondrial gene Dgat2 as a novel therapeutic biomarker for myocardial ischemia-reperfusion.

PMID 40510478 · PMC12159077 · Frontiers in endocrinology · 2025 · 8 claims · 8 setups

Has reproduction · 64

Dgat2 is a hub mitochondria-related differentially expressed gene (MitoDEG) that can serve as a novel biomarker and therapeutic target in MI/RI

heart degs dgat2 mitodegs microarray kegg protein-protein

Experiments

All systems GO for understanding mouse gene function.

Systematic annotation of orphan RNAs reveals blood-accessible molecular barcodes of cancer identity and cancer-emergent oncogenic drivers.

Interpretable artificial intelligence based on immunoregulation-related genes predicts prognosis and immunotherapy response in lung adenocarcinoma.

Cell-free DNA methylome and fragmentome analysis for relapse monitoring of Ewing sarcoma.

Comprehensive bioinformatics analysis and experimental verification identify mitochondrial gene Dgat2 as a novel therapeutic biomarker for myocardial ischemia-reperfusion.