Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• A hybrid empirical and parametric approach for managing ecosystem complexity: Water quality in Lake Geneva under nonstationary futures.

  PMID 35733249 · PMC9245694 · Proceedings of the National Academy of Sciences of the United States of America · 2022 · 7 claims · 6 setups

  Has reproduction · 69

  A hybrid model combining empirical dynamic modeling (EDM/S-map) for biogeochemical sink terms with the equation-based Simstrat hydrodynamic model for physical source terms produces substantially better historical DOB forecasts than conventional parametric models.

  lake convergent multivariate s-map

• Thermophilic and mesophilic sulfate reduction by rare biosphere bacteria in acidic metal-bearing mine wastes from the temperate climate zone.

  PMID 41345487 · PMC12739157 · Scientific reports · 2025 · 8 claims · 8 setups

  Has reproduction · 52

  High in-situ sulfate reduction rates occur in acidic Bom-Gorkhon tailings sediments (up to 9.86 µmol SO4 cm-3 day-1 at 20 °C)

  acidic water sediment tailings radioactive 16s shotgun

• RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress.

  PMID 24324815 · PMC3855774 · PloS one · 2013 · 8 claims · 8 setups

  Has reproduction · 38

  A total of 1,530 transcripts were differentially expressed between well-watered and water-deficit stressed field-grown upland cotton root tissues (913 up-regulated, 617 down-regulated).

  gossypium uppermost root reads bulk leaf rt-qpcr

• Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress Responsive Genes in Rice.

  PMID 34089405 · PMC8179884 · Rice (New York, N.Y.) · 2021 · 8 claims · 7 setups

  Has reproduction · 43

  N22 performs better under dual (low N + low water) stress owing to better root architecture, chlorophyll/porphyrin synthesis and oxidative stress management

  rice ir64 recombinant bulk biomass relative

• Microbial sulfate reduction by Desulfovibrio is an important source of hydrogen sulfide from a large swine finishing facility.

  PMID 34021225 · PMC8140134 · Scientific reports · 2021 · 7 claims · 7 setups

  Has reproduction · 70

  Sulfate-reducing Desulfovibrio are the key microbial players responsible for H2S production in swine manure slurry despite being a minor community component

  swine sediment manure tom1 35so4 16s shotgun

• Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.

  PMID 25520726 · PMC4251292 · Frontiers in plant science · 2014 · 8 claims · 8 setups

  Has reproduction · 93

  24 h of waterlogging significantly alters mRNA abundance of 1968 genes in Jatropha roots (931 up, 1037 down).

  jatropha geo bulk semi-quantitative quantitative

• Prodepth: predict residue depth by support vector regression approach from protein sequences only.

  PMID 19759917 · PMC2742725 · PloS one · 2009 · 8 claims · 8 setups

  Full-text index only

  Residue depth can be reliably predicted solely from protein primary sequence using support vector regression on sequence-derived features.

  structure sequences sequence residue dssp psi-blast