Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics.

  PMID 37036103 · PMC10084500 · GigaScience · 2022 · 8 claims · 8 setups

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  GEN-ERA is a unified, publicly available toolbox of 13 Nextflow workflows supported by 14 Singularity containers for reproducible microbial genomic/phylogenomic analyses in both bacteria and small eukaryotes.

  gloeobacterales gloeobacteraceae publicly ncbi-deposited phylogenomics ssu genome

• Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies.

  PMID 41501078 · PMC12780049 · Nature communications · 2026 · 8 claims · 7 setups

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  MAGPIE is a computational framework (Snakemake workflow) that co-registers Visium spatial transcriptomics with MSI metabolomics and tissue morphology images from same or consecutive sections

  lung brain publicly rodent spatial desi h&e