Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• FragmentFinder-a user-friendly, Windows-based tool for identifying and characterizing short RNAs excised from any noncoding RNA.

  PMID 41704564 · PMC12907730 · NAR genomics and bioinformatics · 2026 · 6 claims · 1 setups

  Full-text index only

  FragmentFinder (FF) is a user-friendly, Windows-executable tool that identifies and characterizes short RNAs excised from any noncoding RNA precursor, requiring no computational background

  pancreatic sncrna

• MIRit: an integrative R framework for the identification of impaired miRNA-mRNA regulatory networks in complex diseases.

  PMID 41800385 · PMC12961272 · Bioinformatics advances · 2026 · 8 claims · 5 setups

  Full-text index only

  MIRit is a comprehensive, open-source R/Bioconductor framework for integrative miRNA–mRNA analysis that supports both paired and unpaired datasets using statistically appropriate methods.

  myocardial ccrcc brodmann synthetic mirna-seq microarray small

• Integrative microRNA and transcriptome analysis reveals sex-specific molecular divergence in human bladder cancer.

  PMID 41578372 · PMC12911049 · Biology of sex differences · 2026 · 8 claims · 8 setups

  Full-text index only

  48 tumor-specific sex-biased (TSSB) microRNAs were identified in bladder cancer, mostly located on autosomes rather than sex chromosomes

  tcga tssb blca mirna-seq bulk kegg