Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
-
Full-text index only
A multi-modal diffusion model with dual-cross-attention for multi-omics data generation and translation.
PMID 41980989 · PMC13253844 · Nature communications · 2026 · 8 claims · 7 setups
scDiffusion-X is a multi-modal latent denoising diffusion probabilistic model for single-cell multi-omics data generation, translation, and interpretation.
-
Full-text index only
Cross-modality representation and multi-sample integration of spatially resolved omics data.
PMID 42114120 · PMC13160428 · Briefings in bioinformatics · 2026 · 7 claims · 4 setups
PRESENT is a contrastive learning-based integrative framework for cross-modality representation of spatial multi-omics data using omics-specific encoders (GAT + BNN) and distribution-aware decoders (ZINB for RNA, ZIP for ATAC)
-
Full-text index only
Integration of aged brain multi-omics reveals cross-system mechanisms underlying Alzheimer's disease heterogeneity.
PMID 41950003 · PMC13244359 · Cell reports · 2026 · 8 claims · 7 setups
Multi-omics factor analysis (MOFA) integrating seven omics views from 1,358 ROS/MAP participants identifies cross-omics biological factors relating to AD phenotypes.
-
Full-text index only
GAMMI: graph-guided contrastive and adversarial integration of single-cell and spatial multi-omics data.
PMID 42108634 · PMC13158126 · Briefings in bioinformatics · 2026 · 6 claims · 5 setups
GAMMI consistently outperforms state-of-the-art integration methods (GLUE, Harmony, MIDAS, scMoMaT) in biological conservation and batch correction across five mosaic single-cell multi-omics benchmarks