Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• From 2D to 4D: a containerized workflow and browser to explore dynamic chromatin architecture.

  PMID 41507775 · PMC12870729 · BMC bioinformatics · 2026 · 8 claims · 3 setups

  Full-text index only

  The 4DGBWorkflow and 4D Genome Browser (4DGB) are a containerized, cross-platform (macOS/Linux/Windows) toolkit that transforms Hi-C data into 3D chromosome reconstructions and provides comparative visualization

  a549 mus computationally hi-c molecular

• Immuno-metabolic dysregulation in type 2 diabetes is associated with altered neutrophil functional plasticity, mitochondrial dysfunction, and compromised responses in sepsis.

  PMID 41520116 · PMC12882159 · Journal of translational medicine · 2026 · 8 claims · 8 setups

  Full-text index only

  Proportions of functionally restricted neutrophil subpopulations (phagocytosis-only vs NETosis-only) are significantly altered in T2D and fail to elicit an immune response upon sepsis induction

  peripheral bone plasma neutrophils flow bulk global

• ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

  PMID 22955991 · PMC3431496 · Genome research · 2012 · 8 claims · 8 setups

  Has reproduction · 74

  ENCODE/modENCODE define a set of working standards and guidelines for ChIP-seq covering antibody validation, experimental replication, sequencing depth, data/metadata reporting, and data quality assessment.

  small-genome nuclear whole-cell encode chip-seq chip-chip immunoblot