Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• baal-nf identifies motif-disrupting variants that decrease transcription factor binding affinity.

  PMID 41526967 · PMC12888418 · Genome biology · 2026 · 8 claims · 7 setups

  Full-text index only

  baal-nf is a nextflow-based pipeline that infers allele-specific binding (ASB) from ChIP-seq data by integrating BaalChIP with de novo (NoPeak) and known (JASPAR) motif mapping to identify motif-disrupting variants

  genotyped chip-seq heterozygous high-quality chip-seq motif evolutionary

• EPD in its twentieth year: towards complete promoter coverage of selected model organisms.

  PMID 16381980 · PMC1347508 · Nucleic acids research · 2006 · 7 claims · 4 setups

  Full-text index only

  EPD is an annotated, non-redundant collection of experimentally defined eukaryotic POL II promoters accessed via genome position pointers.

  rice preliminary primer sequence quality

• MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.

  PMID 34172000 · PMC8235852 · BMC genomics · 2021 · 8 claims · 8 setups

  Has reproduction · 74

  MicroPIPE, an end-to-end Nextflow/Singularity-based pipeline built from systematically validated tool choices, produces high-quality complete bacterial genome assemblies without manual intervention.

  coli sequences nanopore basecalling demultiplexing