Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Evaluating the Utilities of Foundation Models in Single-Cell Data Analysis.

  PMID 41869863 · PMC13170260 · Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026 · 8 claims · 8 setups

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  Among ten/eleven evaluated single-cell FMs, scGPT, Geneformer, and CellFM are the top models considering both performance and user accessibility

  scrna-seq unpaired single-cell scgpt batch multi-omic cell-type

• TGF-β mediates epigenetic control of innate antiviral responses and SIV reservoir size.

  PMID 41862649 · PMC13043299 · Nature immunology · 2026 · 8 claims · 7 setups

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  Combo treatment (anti-IL-10 + anti-PD-1) induces IFN/antiviral gene signatures pre-ATI that are inversely correlated with CA-vDNA, CA-vRNA and 2-LTR circles post-ATI

  lnmcs plasma cd4+ rhesus bulk high-dimensional plasma