Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 4

System / cell line: matched ✕ Assay: mutagenesis ✕ Clear

Machine learning-predicted chromatin organization landscape across pediatric tumors.

PMID 41904260 · PMC13039956 · Scientific reports · 2026 · 8 claims · 5 setups

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SuPreMo-Akita (built on the Akita CNN) enables systematic in silico prediction of somatic SV effects on 3D genome folding across large SV cohorts where experimental testing is infeasible

somatic per-sample tumor paired mutagenesis dimensionality h3k27ac
Parameter-efficient fine-tuning enables scalable transfer of regulatory sequence models to novel contexts.

PMID 41618434 · PMC12930932 · Genome biology · 2026 · 8 claims · 7 setups

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PEFT enables accurate transfer of Borzoi to new datasets while significantly reducing GPU memory and runtime compared to joint training or full fine-tuning

gtex encode wi-38 thp-1 bulk eqtl variant-flowfish
Paroxysmal exercise-induced dyskinesia and epilepsy is due to mutations in SLC2A1, encoding the glucose transporter GLUT1.

PMID 18577546 · PMC2442425 · Brain : a journal of neurology · 2008 · 8 claims · 8 setups

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Co-occurring PED and epilepsy can be caused by autosomal dominant heterozygous mutations in SLC2A1, encoding the glucose transporter GLUT1

family genomic xenopus patients genome-wide pcr glucose
Endogenous retroviruses mediate transcriptional rewiring in response to oncogenic signaling in colorectal cancer.

PMID 39018396 · PMC466953 · Science advances · 2024 · 8 claims · 8 setups

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Primate-specific ERVs are a rich source of enhancers displaying cancer-specific activity across multiple tumor types

cancer hct116 tcga colorectal atac-seq chip-seq bulk

Experiments

Machine learning-predicted chromatin organization landscape across pediatric tumors.

Parameter-efficient fine-tuning enables scalable transfer of regulatory sequence models to novel contexts.

Paroxysmal exercise-induced dyskinesia and epilepsy is due to mutations in SLC2A1, encoding the glucose transporter GLUT1.

Endogenous retroviruses mediate transcriptional rewiring in response to oncogenic signaling in colorectal cancer.